Protein Info for AMB_RS15025 in Magnetospirillum magneticum AMB-1

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 signal peptide" amino acids 7 to 11 (5 residues), see Phobius details transmembrane" amino acids 12 to 25 (14 residues), see Phobius details amino acids 45 to 68 (24 residues), see Phobius details amino acids 76 to 102 (27 residues), see Phobius details amino acids 109 to 126 (18 residues), see Phobius details amino acids 134 to 153 (20 residues), see Phobius details amino acids 161 to 181 (21 residues), see Phobius details amino acids 211 to 234 (24 residues), see Phobius details amino acids 246 to 266 (21 residues), see Phobius details amino acids 277 to 296 (20 residues), see Phobius details amino acids 302 to 324 (23 residues), see Phobius details amino acids 333 to 356 (24 residues), see Phobius details amino acids 362 to 386 (25 residues), see Phobius details PF07690: MFS_1" amino acids 17 to 329 (313 residues), 122.5 bits, see alignment E=9.6e-40

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb2984)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W2Y7 at UniProt or InterPro

Protein Sequence (393 amino acids)

>AMB_RS15025 MFS transporter (Magnetospirillum magneticum AMB-1)
MTPERTSWPAILMAVGAGIAAAFQVGKAPIALPFIRAEFGLDLSLAAWILSIFALMGAAA
GAGMGTLVTRLGSRRLLPVGLVILALGSLAGGLLPGFSGLLAARVVEGIGYMLVVISAPA
LITLLTTPTQRQMAFGLWGAFMPFGMAVSMAAAPSLPLVGWRGLWLGMAVLLILYALLVH
FRMPRPPRPPSPLESHVLRDVADTLRAPGPLLLAATFIPYSATYAALTGFLPTLLIERMG
VTPGTAGLMAALVAGVNIIGNVATGPALRLGLPRRKVMAAAFGIMALGCLGIFQPWIPPG
AAYGLCLMVSAGAGLLPGCILGAASVYAPRLTLVPVTLGLFMQGSNWGQLLGPVVVGAAV
SAWGWSSASLVLTMAASGGILLALTLRRAGKEP