Protein Info for AMB_RS12430 in Magnetospirillum magneticum AMB-1

Annotation: peptidylprolyl isomerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 106 PF13616: Rotamase_3" amino acids 4 to 105 (102 residues), 104.7 bits, see alignment E=6.8e-34 PF00639: Rotamase" amino acids 9 to 106 (98 residues), 104.6 bits, see alignment E=7e-34 PF13145: Rotamase_2" amino acids 38 to 104 (67 residues), 29.1 bits, see alignment E=2.3e-10

Best Hits

Swiss-Prot: 39% identical to PIN1_ARATH: Peptidyl-prolyl cis-trans isomerase Pin1 (PIN1) from Arabidopsis thaliana

KEGG orthology group: None (inferred from 100% identity to mag:amb2474)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W4E7 at UniProt or InterPro

Protein Sequence (106 amino acids)

>AMB_RS12430 peptidylprolyl isomerase (Magnetospirillum magneticum AMB-1)
MSSTVRASHILLMYKGSMRSQATRSKDEALTEINNIKEEINQGADFGQMARQYSDCPSSE
DGGDLGEFPKGAMVPEFEVAAFALKSGEVSGVVETPFGFHLIQRTD