Protein Info for AMB_RS11385 in Magnetospirillum magneticum AMB-1

Annotation: uracil-DNA glycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 211 PF03167: UDG" amino acids 36 to 206 (171 residues), 91 bits, see alignment E=3.9e-30

Best Hits

Swiss-Prot: 47% identical to UDGB_THET8: Type-5 uracil-DNA glycosylase (udgb) from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

KEGG orthology group: None (inferred from 100% identity to mag:amb2250)

Predicted SEED Role

"Uracil-DNA glycosylase, family 5"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W521 at UniProt or InterPro

Protein Sequence (211 amino acids)

>AMB_RS11385 uracil-DNA glycosylase (Magnetospirillum magneticum AMB-1)
MSFSAPGADCGLCPRLAEFRRANRVQFPGWHHDPVPSFGGLEAPLLVVGLAPGLKGANRT
GRPFTGDYAGDLLYSTLIRYGLARGEYRAAADDGLELVGCRITNAARCVPPANKPLPAEF
AACRPFLAAEIAAMPNLRGIFCLGRESHDQVLSTLGVRKAANPFGHARLHALPGGLVLGD
SYHCSRYNTNTGRLTEAMFHQAMEALLGALR