Protein Info for AMB_RS11310 in Magnetospirillum magneticum AMB-1

Annotation: cyclic nucleotide-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 759 PF00753: Lactamase_B" amino acids 269 to 317 (49 residues), 29.6 bits, see alignment 1e-10 PF12706: Lactamase_B_2" amino acids 274 to 345 (72 residues), 27.9 bits, see alignment E=2.7e-10 PF00027: cNMP_binding" amino acids 530 to 613 (84 residues), 38.8 bits, see alignment E=1.1e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb2237)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W534 at UniProt or InterPro

Protein Sequence (759 amino acids)

>AMB_RS11310 cyclic nucleotide-binding protein (Magnetospirillum magneticum AMB-1)
MAKLGRQSKPAPESGPVGGSRMRVVAVSSGISWVEVPEADLRVLCGCPADSVKHLIKRGL
IVPTERAGVAFETGPNAILLSDVPLQNGAFSNLSEFPILQMLYRQGMIIPGHPNCSGRKP
LLLGLAQQVEAQMEYVMRGNYGLLSEEEMMAVGVPEDMAAEWMRMKLRFAFGAIRPPQDL
IDTCIIGDGPVILPGGVTVRRLELNIFEFAYDGETAMVDLNLAAGHTYETPYHLGYHDLE
REYFSVVHSGEGDGWDPERAAMSSILMFQGKIYLIDAGPNIHSALQALGIGVQEVEGIFH
THCHDDHFCGLTTLFRADHRIKYYALPAVRSSVAKKLAALTNIGEDSFGEYFEICDLSLG
VWNDIDGLEVRPIFSPHPVETTVFHFRTPWEDGFRSYAHMADIVSLDVLGQMVDDDETRH
GISSELMTQVCADYLVPADVKKLDIGGGLIHGCAEDFREDQSGKIILSHTALALTKAQKS
IGSGAPFGTVDALIPSYQEYRVRAAHGYLAEYFLGVPEHQIRILLNHPVVTFNPETILLR
EGSYCEDVHLILTGLVETIEPDSDQTATLSAGAMIGESYALSGEPSFETYRALSFVRALK
IPAVLYRSLVERNEMSERISRLADLRNFFNHTWLFGESLSNLTEVRIAETCQPYYLATGE
EIDMTGQDFVFMVRDGRIDRYFDGAVVEYCGIGEPLNESEVLFSQAGEGRLVAAMRSELL
LVPGAMVRAIPVARWKLLELYQRRQRTFSSLRQEAGMVP