Protein Info for AMB_RS09615 in Magnetospirillum magneticum AMB-1

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 711 PF22977: WHD" amino acids 41 to 185 (145 residues), 46.1 bits, see alignment E=5e-16 PF00004: AAA" amino acids 498 to 623 (126 residues), 94.6 bits, see alignment E=6.9e-31

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1903)

Predicted SEED Role

"Cell division protein FtsH (EC 3.4.24.-)" in subsystem Bacterial Cell Division (EC 3.4.24.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.24.-

Use Curated BLAST to search for 3.4.24.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W618 at UniProt or InterPro

Protein Sequence (711 amino acids)

>AMB_RS09615 ATP-binding protein (Magnetospirillum magneticum AMB-1)
MSDPEAFSEVEEFLGALAAWGNLVLEQALRAVTETGGNDPLERLARAAGPSDQDLTERIE
AGWTSLRRRSAATMEAGHFIPWIHLSSLFQLDRAEQTILLLALLPSLDQRYGAVLAQLGG
AENAGYLPLRTFAAVVGRPVAHRALAADAPLRQWEFLESAPDAAAHSVTPFAPDLRLSPL
IAAYLRAEAAPQPHLDHPLETLAPAPALDQLPLMTATRSAMERLLSLWQAPDSHPRGFVL
LAQGQDKVLLEQLCSASLAEVGLTGLRVDGRELLRMAQDGRPLDAVLGRLRVLCRDALLC
NHALVLDNSQWLIREQDDESLLQAVLQTILASQRQTAVINGPVSRLTAQILGFAAHPVLP
AVIRLEPPDAALRLAVWQAHCAAQGLTVASEVVDRLAETAPLSAHQIEMAVRDAASRAVL
TDQPVDTLLAQAAHDQGQSSGLSVAQEVRSRYRFDDIVLAATTRQALDLILVQVRQRHRV
IDQWGFDALTDNPLGLCVLFHGPSGTGKTMAASVIANELGLSLYKVDLSSVLSKYIGETE
KHLAQLFDQAEAMNVVLFFDEAESLFARRTETKDSHDRYANLQTGYLLQRVERYAGTVIL
STNLLKNLDQAFTRRFRFIIEFPFPGPEERLRLWQKAFPAAAPMDPGVVLAPLAEALALS
GGNIKSVALAAAFQAASQDQPITMDHIRYACECEYEKIGKIFPGFELIGDD