Protein Info for AMB_RS09480 in Magnetospirillum magneticum AMB-1

Annotation: multidrug efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1052 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 341 to 361 (21 residues), see Phobius details amino acids 368 to 389 (22 residues), see Phobius details amino acids 395 to 417 (23 residues), see Phobius details amino acids 439 to 461 (23 residues), see Phobius details amino acids 471 to 497 (27 residues), see Phobius details amino acids 548 to 567 (20 residues), see Phobius details amino acids 875 to 896 (22 residues), see Phobius details amino acids 902 to 926 (25 residues), see Phobius details amino acids 933 to 955 (23 residues), see Phobius details amino acids 981 to 1001 (21 residues), see Phobius details amino acids 1009 to 1034 (26 residues), see Phobius details TIGR00915: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family" amino acids 3 to 1042 (1040 residues), 1154.4 bits, see alignment E=0 PF00873: ACR_tran" amino acids 4 to 1035 (1032 residues), 1185.6 bits, see alignment E=0 PF03176: MMPL" amino acids 306 to 497 (192 residues), 38.9 bits, see alignment E=8.1e-14

Best Hits

KEGG orthology group: None (inferred from 70% identity to ara:Arad_3559)

Predicted SEED Role

"RND efflux system, inner membrane transporter CmeB" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W646 at UniProt or InterPro

Protein Sequence (1052 amino acids)

>AMB_RS09480 multidrug efflux RND transporter permease subunit (Magnetospirillum magneticum AMB-1)
MTLSKFFIDRPIFAGVISTVILLAGLISMLLLPISEYPEVVPPSVIVKAQFPGANPKVIA
QTVATPLEEQINGVENMLYMFSQAASDGTMTLTVSFKIGTDPDLATQLVQNRVNQALPRL
PEVTRSLGVTTVKSSPDLTMVVHLTSPNERYDMLYLRNYALLNVKDQLAKIQGVGSVQLF
GSGDYAMRIWLDPEKVAERSMTADEVVAAIRRQNVQVAAGVIGGPPYGSGVELQLPINAQ
GRLTDADQFAEIIIKRDSGVVTRLKDVARVEIDAAQYGLRSLLDNKPAVAIPVFQSPGSN
AIEISNQVRAAMAELKKNFPEGLDYAIVYDPTVFVRGSIEAVVHTLLEAVALVVLVVILF
LQTWRASIIPLLAVPISIVGTFAVMHIFGFSINALSLFGLVLAIGIVVDDAIVVVENVER
NIENGLSPRDATIKAMGEVTGPIIAIALVLCAVFVPIAFISGLTGQFYRQFALTIAFSTV
ISAFNSLTLSPALAVTLLKGHGAPKDALTRGMDRVFGRFFAGFNRVFHGGSHAYGRGVTG
ILGRKSAAMLIYLLLLGATYVGFQAVPPGFVPTQDKQYLVSFAQLPDGATLERTESVIRA
MSDIALKEPGVESAVAFPGLSINGFINSPSAGIVFVTLKPFEERRSAELSGFAISQKLQM
KYLGVKDAFIAIFPPPPVQGLGTIGGFKLQVEDRTDQGYEALDQTMKAVQAKAAQTPELA
RVFSSYKIGMPQLYTELDRTKAAQLGVDVQDVFSAMQIYLGSLYVNDFNKFGRTYQVIAQ
ADRQFRSKPDDILKLQTRNFEGRMVPLGSIVRVTETTGPDSAMRYNAFRSADVNGGPAPG
YSTGQAQAAMTRILDETLPKGMGYEWTELTYQQILAGNTAMLVFPICVLLVFLVLAAQYE
SLFLPAAIILIVPMCLLSAITGVWLTGGDNNMFTQIGLFVLIGLACKNAILIVEFARELE
IAGKGTVEAAVEAAHLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGVAVFFGMLGV
TFFGLFLTPVFYVLMRALEKRVTGTEKVHHHV