Protein Info for AMB_RS09430 in Magnetospirillum magneticum AMB-1
Annotation: ABC transporter ATP-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 46% identical to TAUB_PSE14: Taurine import ATP-binding protein TauB (tauB) from Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)
KEGG orthology group: None (inferred from 100% identity to mag:amb1865)Predicted SEED Role
"Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q2W656 at UniProt or InterPro
Protein Sequence (262 amino acids)
>AMB_RS09430 ABC transporter ATP-binding protein (Magnetospirillum magneticum AMB-1) MDALAPVSPPVIRLEGLAFGYPGDRSHAIVLQDLDLEVRHGDFIALVGQSGAGKSTLLRV IAGLVPAVLGQVYVEPPKEPDSRQIGMVFQDARLLPWRRVLANVEYGLEGLVKSRHERRR RALAALDLVGLTEFADRWPHHLSGGQRQRVGLARALAVRPALLLMDEPFGALDPATRHGL QDQLLSIWQATGTSIIFVTHDIDEATYLADRVIVLGGSPARILRQLDVEAPRPRCRNDLA DDPTATALRSQLYETFFYKDGI