Protein Info for AMB_RS09320 in Magnetospirillum magneticum AMB-1

Annotation: glycoside hydrolase family 3 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 signal peptide" amino acids 1 to 14 (14 residues), see Phobius details transmembrane" amino acids 23 to 44 (22 residues), see Phobius details amino acids 53 to 70 (18 residues), see Phobius details PF00933: Glyco_hydro_3" amino acids 98 to 377 (280 residues), 162.8 bits, see alignment E=7.4e-52

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1842)

Predicted SEED Role

"Beta-glucosidase-related glycosidases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W679 at UniProt or InterPro

Protein Sequence (393 amino acids)

>AMB_RS09320 glycoside hydrolase family 3 protein (Magnetospirillum magneticum AMB-1)
MLWAGGILLPVLGFNLHNPYLTLVRGWALPLLVIVELAALAWIARRGRDRHLALLWCAAL
AATLAGEGKFQWDKRWVLAQSGAQAHDLGRHFVVGYRRYEDVEALAAKGLIGGIFVTRHN
LAGRTADEFRREIAALQAVRRNNGLPPLLVATDQEGGIVSHLSPPLPPMPSLAELASLPL
DQRVEAARLYGERQGLELARLGVTVNFAPVADIRREGPRNRLDFHSLIARRAISHDPEIV
GQIATAYSTGLLRAGIVPTVKHFPGLGRVREDTHHFQASLAASEDDLEATDWRPFRQVLS
DTPALLMVGHVRLAAIDPDRPASHSRAVIHGIIRKKWGFTGRVITDDLTMPPVYHGGLCI
AVTEALDAGVDLLLISFDGQQIYRALACAMKAR