Protein Info for AMB_RS09155 in Magnetospirillum magneticum AMB-1

Annotation: divergent polysaccharide deacetylase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 366 transmembrane" amino acids 15 to 37 (23 residues), see Phobius details PF04748: Polysacc_deac_2" amino acids 148 to 359 (212 residues), 265.9 bits, see alignment E=9.2e-84

Best Hits

KEGG orthology group: K09798, hypothetical protein (inferred from 100% identity to mag:amb1809)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W6B2 at UniProt or InterPro

Protein Sequence (366 amino acids)

>AMB_RS09155 divergent polysaccharide deacetylase family protein (Magnetospirillum magneticum AMB-1)
MLMGNKVPLWERPSVLVGVMVAVLVLGVGIGLALGLWSGKAGKAPPPGAEQEPAPVIMAS
PAAPSQPMPSAGDEPDDGRPLLQPPPPRPDPGSSEALEFGHASDVVALAPLPPPPPAPEV
KLPPAGAAIWLRNALPVPKTGGKPVIAIIIDDLGVDRRRSERMAQLKGPLTLSYMTYAED
VAHQSHDARARGHELMVHVPMQPQSASYDPGAEVLEVGLSSDEIRRRLDWGLSRFDGYVG
INNHMGSRFTSDPAGMRVVMAELRRRGLAFIDSVTSERTVGAETARHYGVPFAARHVFLD
NDQGVAHVRAQLAKTEAYARKHGAAIAIGHPHDGTIEALAGWLPGLEGRGFALVPVSTII
RMGNGG