Protein Info for AMB_RS08815 in Magnetospirillum magneticum AMB-1

Annotation: phage tail protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1205 transmembrane" amino acids 289 to 307 (19 residues), see Phobius details PF06791: TMP_2" amino acids 240 to 433 (194 residues), 30.5 bits, see alignment E=1.5e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1741)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W6I0 at UniProt or InterPro

Protein Sequence (1205 amino acids)

>AMB_RS08815 phage tail protein (Magnetospirillum magneticum AMB-1)
MTDGVFVTFGADISQFQAAVQQAAGAVDQFADKSKAAGEGGPGQNAHEQAQSVEELRQKM
QALGDMVREVSAQVAAQNAQFSAAAQAVPQMSAAIQQSADAVNVSAERATIAAAANRDLA
ASGDQVRQAAAVTATETASAAARTTTSLASAAAAAGRASDSVRSLNEALASGGERGFGSF
APTVDQMTKRFGSFREAVEEVNKQIRAGNMDIGYANQLVPQMKVAYDEAASSAGKQATKI
KESAEATEKLSFASVGARRELIVLAHEAVSGNISRMPGSMMVLAERMGGVSLALMGQVGA
LAAVAYVSGEVLAHHEKLNQALTQSEANLKATGAAAQISRAELKAYMEQLQDMNGIAREG
AEQVVVAFSKMRGVTPSIMADMVRGMEGWVAVTGEEAPAAAAKLGNALSTPSKMLEEVDK
NTGRVSAATLAMVAELERAGDIMGARTAAARAFGDAMEQAAKDSLTPFQLAAKEAANNLR
LLGDAMTGTSHEGDVLASMMHSVASALEVMRTPAEELGKAFWGVIDIVKMLIETLEYLDE
AARAIVGPVAASVANAISAMALAAKGDFAQAAEMLKRTPADIAREWETHTAAMQGHLKGV
IDTARDIKAPWLSWSKPEEHAPAPAADKPQRQPEDESIKRAMHLAEQYRSDEMRRADLQG
KINELKRGEEALVSRIAQDEKDAGGDQAKLDRLKAERAELERIRQARGEAERQKAEIGDK
GGAETALQGLQAQLDRRRDMERHSAEEWHVIERDFWAKALTTAQQGTKDYDQILRRKTQA
QKAVDDDIYRTNLADLERQRQAAENGSAERIAIARREADLVKAQMGERSKDYQDALRKIG
EMEREAAEQTKRIEREKAEAKRQFARDSLALQAEELAIQQQTGQISALEQIAQLRKLKDQ
EYALEKKALNDRKALYRQGTVEYQRAMNDLAKLDQKRALDLKKLDAQQLAEHKRVISEWT
APMKGAMSTMVSGVLQGTMTMQQLFGRALEGIATKYAEKGLEIAMDWAENQLAMALSTES
SAAQQTAAVTEETTTAIMESQIAAAGSISADAARAAAAAYASICAIPIVGPALAPAAAAE
AYASTEAWLGAVAVAERGWGEVPEDNAPALLHKKEMVLPADIADPLRGLMRSMPSYGLPL
EMTRNNGIWKMPEPSSEAPARATTMPWPITTPWRCGWRGNAGPAPSSTSPSRSRGTSTPA
TGSSG