Protein Info for AMB_RS08015 in Magnetospirillum magneticum AMB-1

Annotation: Holliday junction resolvase RuvX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 PF03652: RuvX" amino acids 18 to 149 (132 residues), 138.5 bits, see alignment E=9e-45 TIGR00250: putative transcription antitermination factor YqgF" amino acids 20 to 149 (130 residues), 106.6 bits, see alignment E=5.1e-35

Best Hits

Swiss-Prot: 100% identical to YQGF_MAGSA: Putative pre-16S rRNA nuclease (amb1588) from Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)

KEGG orthology group: K07447, putative holliday junction resolvase [EC: 3.1.-.-] (inferred from 100% identity to mag:amb1588)

Predicted SEED Role

"Putative Holliday junction resolvase YggF"

Isozymes

Compare fitness of predicted isozymes for: 3.1.-.-

Use Curated BLAST to search for 3.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W6Y3 at UniProt or InterPro

Protein Sequence (155 amino acids)

>AMB_RS08015 Holliday junction resolvase RuvX (Magnetospirillum magneticum AMB-1)
MPILAPAELLASLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTQDAELLL
AVVDKQGVGGLVLGLPVEMDGFEGPRCQSVRSFAANLARLRDMPIAYWDERLSTSAVTRT
LLEADSSRKRRAEVVDKMAAAYILQGLLDNRSGFA