Protein Info for AMB_RS07295 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 614 transmembrane" amino acids 142 to 164 (23 residues), see Phobius details amino acids 170 to 194 (25 residues), see Phobius details amino acids 205 to 227 (23 residues), see Phobius details amino acids 242 to 264 (23 residues), see Phobius details amino acids 272 to 293 (22 residues), see Phobius details amino acids 299 to 319 (21 residues), see Phobius details amino acids 331 to 350 (20 residues), see Phobius details amino acids 379 to 401 (23 residues), see Phobius details amino acids 422 to 446 (25 residues), see Phobius details amino acids 457 to 476 (20 residues), see Phobius details amino acids 487 to 505 (19 residues), see Phobius details amino acids 511 to 529 (19 residues), see Phobius details amino acids 536 to 563 (28 residues), see Phobius details amino acids 571 to 592 (22 residues), see Phobius details PF01943: Polysacc_synt" amino acids 151 to 402 (252 residues), 42.1 bits, see alignment E=7.2e-15 PF13440: Polysacc_synt_3" amino acids 161 to 453 (293 residues), 141 bits, see alignment E=4.9e-45

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (614 amino acids)

>AMB_RS07295 hypothetical protein (Magnetospirillum magneticum AMB-1)
MGPRPAAGAGRKGPDAGRGGRDSHGSGSRRCLCDAFHHRGSRPCGSGSPGHGDSLRSQPG
RRAVGTGPPQPRRRMVRPGRRIHRRRGDPASPEGFGGGAPAGPARCGGRSPHLWPHERVR
GLADPLRERRVSLDIARSLRWSYGGMAANLVLQVAFAALAARLVSAESYGMAAVATGLVS
YLSYLSDLGVGLLAVRNRDLDAADLWGVALVGLAGNLVIVAAVWLAAPSVAAFVGFSGEG
VWVLRALSLLAPLGGLNTAALAWLNREMDFRALAIMSLVGKLVGQGAVTLPLAWAGWGVW
ALVAGALGQVAAGLAIALWRQPPRLPRRSRWPAIGAALRVGVNFSLIRLLDSTQAQMIPL
SAATLMGAGAAGLFDRGALLTLVALELITAGAGRVLLPVYGRMGEEERGRIPQAFLSACR
RVLCLVLPLAAGVAAAAEPLVLTVFGGGWSALVEPLRLLAVLAGLRSVAMLAGGLVEAQG
GLYHNMMQRICVLVLLLSWICVVRPTELGWLLAGAVLAEGASALALLALASRAAGLAFAA
VLVPPLLALSVALPVGGVMALAAGADGSPGYRLVLTMLCGGICLGGVLLLHPHSGLRGEV
RRMVRHAFAGNVSL