Protein Info for AMB_RS06895 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 PF08238: Sel1" amino acids 20 to 55 (36 residues), 28 bits, see alignment 1.2e-10 amino acids 159 to 193 (35 residues), 28.7 bits, see alignment 7.6e-11 amino acids 195 to 229 (35 residues), 32.6 bits, see alignment 4.4e-12 amino acids 230 to 265 (36 residues), 34.4 bits, see alignment 1.1e-12 amino acids 268 to 300 (33 residues), 35.2 bits, see alignment 6.5e-13 amino acids 302 to 336 (35 residues), 21.7 bits, see alignment 1.2e-08 amino acids 338 to 373 (36 residues), 39 bits, see alignment 4e-14

Best Hits

KEGG orthology group: K07126, (no description) (inferred from 100% identity to mag:amb1362)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W7K9 at UniProt or InterPro

Protein Sequence (393 amino acids)

>AMB_RS06895 hypothetical protein (Magnetospirillum magneticum AMB-1)
MAREPEIVTRYRSLALENDPVAQFKLGDLYRLGYQVKRDLDEAVVWLVRSARQGNADAMA
LLKKMAADGVDVRRRVDDLPGKWQAAPRPDYGAPPAEAPRPPAAEPEPAPPPPQPVEAEL
KPKVIPLPEIEVETDPLRIGETIDDPVALRAAVDKGDLAAMVALGNAYREGKGVAVDPAE
AVRLYTLAAKAGDARGQYSLGVMYDLGLGVAQSNAHALKWFREAAKQGDPQAQFNLGNMI
QQGRGVESSAEVAAKWFKQAAEQGDAGAIFALGALYEAGTGVERDEIQAVELYRQAADQG
LALALHNLANMLRQGRGTDADPFEAAMLCRRAAEQGLPEAQYNYAAMLALGLGVEKNEDA
AIRWFRRAAKSGDPRGEAQAEALEKRRRAEAPS