Protein Info for AMB_RS06535 in Magnetospirillum magneticum AMB-1

Annotation: methyltransferase domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF05175: MTS" amino acids 269 to 372 (104 residues), 24.7 bits, see alignment E=5.7e-09 PF13489: Methyltransf_23" amino acids 276 to 383 (108 residues), 52 bits, see alignment E=2.4e-17 PF13847: Methyltransf_31" amino acids 278 to 376 (99 residues), 34.8 bits, see alignment E=4.4e-12 PF13649: Methyltransf_25" amino acids 279 to 368 (90 residues), 56.3 bits, see alignment E=1.6e-18 PF08242: Methyltransf_12" amino acids 280 to 370 (91 residues), 46.4 bits, see alignment E=2e-15 PF08241: Methyltransf_11" amino acids 280 to 372 (93 residues), 60.2 bits, see alignment E=8.7e-20

Best Hits

Predicted SEED Role

"SAM-dependent methyltransferases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (430 amino acids)

>AMB_RS06535 methyltransferase domain-containing protein (Magnetospirillum magneticum AMB-1)
MRRRSMSVFSVTVRLRIPSKIAAGYSSFQIPVLGRFGMEMTFDQGLHLAARLCEQGVFNQ
AADLLTKLLGISPNHPDALFLRGHVHLRTGEIGPGIERMRRAVGTAPHRSDLKSALCGAL
FTAGDIPGLFLLAADAIVTAEGKSLPEALYLMIAATERTAISAPPFAACRTLVAGIGTKP
GDRLMDMLAAGQRSIPPEQMPAVYLGLAYILHCGGADDDAVEMLGRAGSALEVTSPPPPS
ETNYADLAATYDDNSLHRGCNDMMMSVIEAHLPAHVASILDACCGTGLLGTFLRPRTKYL
SGFDLSAEMLDLARARSVYDSLTVADASSDTAVPAGPFDAVVSSAALHHIEDLRPFISNA
ARRLRSGGYLIFSTEATTDRSHRGVSGVGGFAHSRAYLLAAAEAAGLETISISLRLHRRY
PGFYAVFRRP