Protein Info for AMB_RS06110 in Magnetospirillum magneticum AMB-1

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 403 transmembrane" amino acids 20 to 35 (16 residues), see Phobius details amino acids 45 to 74 (30 residues), see Phobius details amino acids 94 to 117 (24 residues), see Phobius details amino acids 157 to 176 (20 residues), see Phobius details amino acids 182 to 202 (21 residues), see Phobius details amino acids 224 to 243 (20 residues), see Phobius details amino acids 255 to 279 (25 residues), see Phobius details amino acids 292 to 310 (19 residues), see Phobius details amino acids 317 to 339 (23 residues), see Phobius details amino acids 351 to 374 (24 residues), see Phobius details amino acids 380 to 399 (20 residues), see Phobius details PF07690: MFS_1" amino acids 29 to 240 (212 residues), 81.3 bits, see alignment E=1.4e-26 amino acids 235 to 400 (166 residues), 60.4 bits, see alignment E=3.1e-20 PF13347: MFS_2" amino acids 30 to 378 (349 residues), 42.3 bits, see alignment E=7.7e-15 PF00083: Sugar_tr" amino acids 57 to 200 (144 residues), 32.5 bits, see alignment E=9.1e-12 amino acids 232 to 398 (167 residues), 40.6 bits, see alignment E=3.3e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1204)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W817 at UniProt or InterPro

Protein Sequence (403 amino acids)

>AMB_RS06110 MFS transporter (Magnetospirillum magneticum AMB-1)
MNEPSVVPGDQAGSGLPAQAIPKGVWALGFVSLLMDTSSEMIHSLLPVFLTSVLGVSALS
IGIIEGIAEAIAAITKVFSGAISDWAGKRKPLVLFGYGLAALTKPVFALAPSLGWVITAR
FADRLGKGIRGAPRDALVADLTPPHLMGAAFGLRQSLDTVGAFAGPIIAILVMGLTSDDY
RLLFWIATIPALLAVLLIVFGIREPTTHKGAAKARLSWAEVKRFPLAYWVVVAIAMLMTL
ARFSEGFLLLRAQSVGLQAALVPLVFVAMNIVYAASSYPVGHLSDRLGRRGLLLGGFSVL
IVADLVLAQASGIAQVMVGVALWGLHMGMTQGLLATLVADTAPASLRGTAFGVFNLASGI
ALLFASVIAGWLWTVIGPSATFQAGAAFTAIAVVALLFWRGDR