Protein Info for AMB_RS05890 in Magnetospirillum magneticum AMB-1

Annotation: DNA methylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 PF02195: ParBc" amino acids 13 to 87 (75 residues), 43.3 bits, see alignment E=3.2e-15 PF01555: N6_N4_Mtase" amino acids 197 to 389 (193 residues), 57.3 bits, see alignment E=2.3e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1160)

Predicted SEED Role

"DNA modification methylase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W861 at UniProt or InterPro

Protein Sequence (422 amino acids)

>AMB_RS05890 DNA methylase (Magnetospirillum magneticum AMB-1)
MTHPLPDTVEAWPIDRLIPYGRNARTHSDSQVAQIAASMVEFGWTNPVLADSKGNVIAGH
GRLAAAKSLGLDTVPVVILDHLTEAQRRAYILADNKLALNAGWDDETLAAELHALNAEGY
DLDLIGFSAEELDALMAPLDDEGNGQGEGDEDEIPEPPADPVARPGDLWILGRHRLLCGD
STNATDVERLLAEATPHLMVTDPPYGVEYDPDWRNQAGVSSTSRTGKVANDDRADWREAW
ALFPGEVAYVWHSAIYTRTVADSLEANDFKLRAQIIWSKNRFVLGRGDYHWQHEPCWYAV
RKTGTGHWQGARDQATIWTIGNNGDEDEATVHGTQKPVECMRRPILNNSAEGEAVYEPFA
GSGTTVIAAETTGRICFAMELNPAYADVIVGRWQKLTGQKAVLNGDGRSFEEIAAGKAVS
AE