Protein Info for AMB_RS05855 in Magnetospirillum magneticum AMB-1

Annotation: P-loop ATPase and inactivated derivative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 838 PF23639: DUF7146" amino acids 129 to 225 (97 residues), 76.4 bits, see alignment E=3.1e-25 PF13362: Toprim_3" amino acids 234 to 320 (87 residues), 87.7 bits, see alignment E=8.8e-29 PF05272: VapE-like_dom" amino acids 522 to 735 (214 residues), 273.7 bits, see alignment E=1.5e-85

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1153)

Predicted SEED Role

"FIG00780772: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W868 at UniProt or InterPro

Protein Sequence (838 amino acids)

>AMB_RS05855 P-loop ATPase and inactivated derivative (Magnetospirillum magneticum AMB-1)
MIDLNDVWEASARHDLDDIRDRLAATAHDWLPGLFPNARLAQDRRTLRCADLSGRTPRKE
GSCILHLTGSHAGWGFDHATGESAGPIDLIHHATGLSERDLFEEAARLARLDLPAPSRPN
SPKPTHDLEVARIVGSTQPLAGTVGESYLRYRGIGDPQSPDLLFHNDLADFDSRRGWPGL
VGIVRDGAGNPTGGIHRTFLLEDGSGKAPPGKKMLGPIAGGSVRLAPIPADGHLGIGEGI
ETALSAWAIFGIPTWAALSAGNLRDWQWPDGIRRVTIFADAGEAGQQAAAALAEQLTAAS
IPPTIVSPLHGDDFNDDLRKGVVARDYAPAPTVTEPMPFDFTMLYDTALALTFPPDMGSL
AKLLGNLAQARLDPVEERQVLVAIKATTRIPVSVTEKQIRSLRRQGSSANAPTVQPAWFS
QLRTSADGTPERNEANVITALSCDEAFAGALVFDEFRQEIMVNRPLPWDDGSPVPRPWAE
ADNVRCAEWLQRREVNVSPLVVARSIGAVARDITIHPVREYLTGLQWDGTRRLESWAVAH
LGATDTRLNQAFGSLWMISAIARIMAPGAKVDHMLILEGPQGAKKSTALKILAGGDWFTD
ELAEIGSKDAAQQMRGVWIIEIAELDAIGRAEVSRIKSFLTRTVDRYRPPYERYVIDVPR
QCVFAGSVNPDTYLRDETGNRRFWPIRCGQIDLEAIRRDRDQLWAEAMTLYSQGAIWWLD
DPELIALARAEQEERYQGDAWDGLIDRWLAFDKERVNYGYGAYDDWREVEVARSEPLTDV
SVGEILRNAIGIEPGRWTRADQMRVTAYLKAQGWTRYQARVGERATGSREWRYTRATG