Protein Info for AMB_RS05800 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 698 transmembrane" amino acids 111 to 129 (19 residues), see Phobius details amino acids 148 to 166 (19 residues), see Phobius details amino acids 179 to 198 (20 residues), see Phobius details amino acids 210 to 232 (23 residues), see Phobius details amino acids 245 to 268 (24 residues), see Phobius details amino acids 275 to 295 (21 residues), see Phobius details amino acids 349 to 373 (25 residues), see Phobius details amino acids 379 to 398 (20 residues), see Phobius details amino acids 419 to 437 (19 residues), see Phobius details amino acids 460 to 479 (20 residues), see Phobius details PF02163: Peptidase_M50" amino acids 188 to 284 (97 residues), 29.6 bits, see alignment E=6.6e-11 PF13533: Biotin_lipoyl_2" amino acids 451 to 497 (47 residues), 28.6 bits, see alignment 1.4e-10 PF13437: HlyD_3" amino acids 542 to 621 (80 residues), 34.2 bits, see alignment E=5.5e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1143)

Predicted SEED Role

"Peptidase M50"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W878 at UniProt or InterPro

Protein Sequence (698 amino acids)

>AMB_RS05800 hypothetical protein (Magnetospirillum magneticum AMB-1)
MIAAATLPPLREELTIHDGPVGHDGAPTWTLHDPLRNQFYRLTWSAFEALSRWRLGDPEQ
VAAAVSAETTLRIEAEDVGEVLDFLTRSQLLKPSSPMDVARLLAIHDAHKTGWLTWLLHH
YLFFRIPLVRPNQILDVMLPWVGWMGGRAFRLATLIALLAGLFLVGRQWNVFTTTFVDHF
SMEGLASFGIALGVAKIIHELGHALVAKSYGLRVPTMGVAFLVLMPVLYTDVNEAWKLTS
RRQRLMVGGAGILAELTLAVWATLAWGLLPDGMVRGMAFTLAATTWISSLAINLSPFMRF
DGYFLAMDALDMPNLHNRAFALARWHLREVLFRIGEAIPERFPPHIQAAMVGFAWAVWIY
RLTLFLGIAALVYHFFIKVVGVILFAVEMGWFVLRPFFVEFGEWRKRAGAIRTTKRSRIT
FGLFAILILLAIVPWNGRVAAPAMLKGKDHVTLYAPSPGILSEIAVATGDTVAVGAILAR
LDNPDMTLRLHQAERRIGVLKYELEAVGFEDTFRNRAKAIAQELEAVTAERTALLRDQAR
LTLTAPIAGSVVDLSPMVQTGQWLNPKEPILGLTAGGQIEAYVAEDDLPRITVGASATFI
TEGMAGARAATVTAIDRTAVKALTDPQMTVPYGGSIPARFDNKALAPDVAVYRVRLSVGG
ESVSTPLRGQVHIDGERRSLLGRVLRGAAAVIIREWGA