Protein Info for AMB_RS04920 in Magnetospirillum magneticum AMB-1

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 transmembrane" amino acids 7 to 28 (22 residues), see Phobius details amino acids 45 to 65 (21 residues), see Phobius details amino acids 74 to 94 (21 residues), see Phobius details amino acids 101 to 124 (24 residues), see Phobius details amino acids 140 to 160 (21 residues), see Phobius details amino acids 166 to 187 (22 residues), see Phobius details amino acids 225 to 244 (20 residues), see Phobius details amino acids 256 to 278 (23 residues), see Phobius details amino acids 290 to 309 (20 residues), see Phobius details amino acids 315 to 337 (23 residues), see Phobius details amino acids 346 to 372 (27 residues), see Phobius details amino acids 379 to 397 (19 residues), see Phobius details PF07690: MFS_1" amino acids 8 to 365 (358 residues), 100.9 bits, see alignment E=1.1e-32 amino acids 259 to 407 (149 residues), 54.5 bits, see alignment E=1.4e-18 PF13347: MFS_2" amino acids 12 to 326 (315 residues), 35.4 bits, see alignment E=7.3e-13 PF00083: Sugar_tr" amino acids 61 to 178 (118 residues), 24.8 bits, see alignment E=1.5e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0961)

Predicted SEED Role

"putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W8R0 at UniProt or InterPro

Protein Sequence (419 amino acids)

>AMB_RS04920 MFS transporter (Magnetospirillum magneticum AMB-1)
MRQHNALYLLSALCMVFMTLVVAIQPLFLRNVLNISFETAGAVNANVQVVTEVLDLFIFA
YLGYLSDRIGRVRIIVAGFLVAAIGAVIAPLSPWIGGASIGALVVYYVSRVIMSAGSGAV
WPQLSALAGDFSDDDTRARLMSNTAFMMAFGVTLVYAVLMQIPAHAGIAVTMLLTAAVSL
AGAWLAGKFLVDVAPRTQETSVPWRAVWSLVKAEPRLRLAFASSLFARSDMVFVGLFLML
WFIYFADLIKVGQAEAAARAGILIGLMGAVVMLSIPVWRSFIEHFGRIQAVLLGMVLSAL
GFIMLGFIINPFDWFIVLPILLIASGQAGCFVAPQILTVDYAPRDLLGSVLGAFNVIGCI
GIIFFVQVGGFLFDYVGPPAPFVFTGVGNLIISAYALRLLKREARDGGGDDAPGDDGVA