Protein Info for AMB_RS04915 in Magnetospirillum magneticum AMB-1

Annotation: DUF445 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 53 to 73 (21 residues), see Phobius details amino acids 391 to 412 (22 residues), see Phobius details PF04286: DUF445" amino acids 55 to 412 (358 residues), 351.9 bits, see alignment E=4e-109

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0960)

Predicted SEED Role

"Putative membrane-spanning protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W8R1 at UniProt or InterPro

Protein Sequence (422 amino acids)

>AMB_RS04915 DUF445 domain-containing protein (Magnetospirillum magneticum AMB-1)
MLSSPEDNDNRTQHAGLSRMRTYATALLALISAVFAFSVWGEKAWPWLAPVRAFAEAALV
GGIADWFAVTALFRHPFGLPIPHTAVIPRNHGRIAAAIGRFVADNLLASQALAQRLEELD
TAGRLGRWLARPETAAMIAARIAGSLPPIVDTIGEQRWRSTIGGGLRKVVDTAITAPRMA
NILSYMVGRGYHHAILDHLVTEARSFVAQNRSFIRAKVAKECPEWLPLWVETQIAQGVTQ
GIDGSLGELTAPDHPWRLKFELFVHETIDGMTNSPHFAQRIEEVKMQVLDDPALDAYLRQ
LGSSAYDHLMEEAKTMEMLLENGLREIGQRLEHDTAMRATLNRWLRDATEALLVPRRELI
GSLITDLVMRWRTPFLIEKLESHVGKDLQYIRINGTVVGGLVGLAIYTVTTLAQRKCISS
FF