Protein Info for AMB_RS04910 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 469 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 42 to 67 (26 residues), see Phobius details PF07219: HemY_N" amino acids 27 to 122 (96 residues), 52.2 bits, see alignment E=3e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0959)

Predicted SEED Role

"Similar to E. coli HemY protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W8R2 at UniProt or InterPro

Protein Sequence (469 amino acids)

>AMB_RS04910 hypothetical protein (Magnetospirillum magneticum AMB-1)
MLLRLIVLLIFMSPVVLATLWFSDNAGTVQVEWLGWHVDTNVPVLLGILLAVFMLFSGLT
RLSALVADLPAKLGKSRQARGREKGMLALLAALDAAESGDVGDGRRLGAEAARLLDSPEL
AARLDRLIPRPAAPPAATLRPEPAKGRLFAKKPPAPPVVEREPPPPVKAAPPPAPVAVVE
TPAAPADPSAEDAAAFAAKLRDGEWAAAQACIDATLSAGRLSPALAARWRAVVLEGQACL
DSQDDPARSLRLAREALAADPGFLPAALHVLRQEVSEGRRSEAEAVLAAVWRSAPARILL
ETCSPLWREDDAESRLKRLEVLAEWAPHDPEGHLAAGEAAVAAAKWGVARRHLMAALKIA
PDALGCRLMAEIEDKEPGGAERAEIWRRREREAPAAPTWVCEACGATSGSWAPYCSACAA
GAAIQWTRPAHKPENPPAPASVPPSAEAPPAPAEPRVSRIQAESEIEKL