Protein Info for AMB_RS04535 in Magnetospirillum magneticum AMB-1

Annotation: C4-dicarboxylate ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 312 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR02122: TRAP transporter solute receptor, TAXI family" amino acids 1 to 309 (309 residues), 361.6 bits, see alignment E=1.4e-112 PF16868: NMT1_3" amino acids 27 to 309 (283 residues), 303.1 bits, see alignment E=3.8e-94 PF12974: Phosphonate-bd" amino acids 37 to 168 (132 residues), 31.9 bits, see alignment E=1.4e-11 PF09084: NMT1" amino acids 100 to 187 (88 residues), 33.4 bits, see alignment E=6.9e-12

Best Hits

KEGG orthology group: K07080, (no description) (inferred from 100% identity to mag:amb0890)

Predicted SEED Role

"TRAP transporter solute receptor, unknown substrate 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W8Y1 at UniProt or InterPro

Protein Sequence (312 amino acids)

>AMB_RS04535 C4-dicarboxylate ABC transporter (Magnetospirillum magneticum AMB-1)
MKRVVFGAVLATILAVPAFAADQFLNILTGGTSGVYYPLGNALSSIYGKALPGARVTVQA
TKASVENLNLLQMGRGELAFTLGDSLTQAWDGVEEAGYKAPLKKLRTMAAIYPNYIQIVA
TADSGIKTLADLKGKRVSVGAPKSGTELNARAIFKAAGLAYSDMKVQYLPFGESVELMKN
KQLDATLQSAGLGVSSLRDLATGDDIVIVAISPEVIAKTGDSAYIASVVPANTYRGQTVD
VPTAAVRNFLVTHEGVPAELVYGMTKAMFTNMPDLLAAHSAAREIDPAHAAKSPIPLHPG
AEKYYREAGLLK