Protein Info for AMB_RS04050 in Magnetospirillum magneticum AMB-1
Annotation: thiamine pyrophosphate-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K01652, acetolactate synthase I/II/III large subunit [EC: 2.2.1.6] (inferred from 100% identity to mag:amb0792)Predicted SEED Role
"Acetolactate synthase large subunit (EC 2.2.1.6)" in subsystem Acetoin, butanediol metabolism or Branched-Chain Amino Acid Biosynthesis (EC 2.2.1.6)
MetaCyc Pathways
- superpathway of branched chain amino acid biosynthesis (16/17 steps found)
- superpathway of L-isoleucine biosynthesis I (12/13 steps found)
- L-valine biosynthesis (4/4 steps found)
- L-isoleucine biosynthesis I (from threonine) (6/7 steps found)
- pyruvate fermentation to (R)-acetoin I (2/3 steps found)
- pyruvate fermentation to (S)-acetoin (2/3 steps found)
- L-isoleucine biosynthesis IV (4/6 steps found)
- pyruvate fermentation to (R)-acetoin II (1/2 steps found)
- pyruvate fermentation to isobutanol (engineered) (3/5 steps found)
- L-isoleucine biosynthesis II (5/8 steps found)
- L-isoleucine biosynthesis III (4/7 steps found)
- superpathway of (R,R)-butanediol biosynthesis (2/5 steps found)
- superpathway of 2,3-butanediol biosynthesis (2/6 steps found)
- superpathway of L-threonine metabolism (10/18 steps found)
KEGG Metabolic Maps
- Biosynthesis of alkaloids derived from histidine and purine
- Butanoate metabolism
- C5-Branched dibasic acid metabolism
- Pantothenate and CoA biosynthesis
- Valine, leucine and isoleucine biosynthesis
Isozymes
Compare fitness of predicted isozymes for: 2.2.1.6
Use Curated BLAST to search for 2.2.1.6
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q2W979 at UniProt or InterPro
Protein Sequence (613 amino acids)
>AMB_RS04050 thiamine pyrophosphate-binding protein (Magnetospirillum magneticum AMB-1) MKVGDYVINRLAEEGIDKIFVVYGAANGDLIDAFTRTNKTEYVATMHEQGGGFAAEAYAK IKGIPGATIATSGPGGQNLLTSMGNCFYDSIPCVFMTGQINSQFLRPDPSIRQVGFQETD IVGMAKPVTKYAKMITSAAEIRYEVEKALFIAKEGRPGPVLLDIPLNIQKQDIDPDKLFG FDTVAAQRSWNLDAVDAAIDTYLADLAKSKRPTIMVGGGVRLANAVDDLVELGEVLGVPM FPTWNALDVVTSDLPQYGGRIGTYGGAGRNFGIQNSDLLLAVGSRISGRITGGNIHSFAR EAKKYVVDVDETLLQKHLQQVPLDVNVLCDAGIFLRRLVARAKALRANGGLGDHKAWLSK VLDWRDRYDPVLPEFFEQKGTVHPYAFVRKLSEMMKGGDIVVGDCGGNIVVTSHAFETKR GQRLLTNNGNSPMGFSFAGAMGAWFAAPNNQVVCIIGDGGMNMNIQELQTFVNYGVKVKT FILNNHIYGITKAYQETNFNGRAEACGPKGYAPPDFVKIAQAYGVKTVTIETQQEMEAKI AEVLAADCAVVCDVNMHEYHTYEPRIFGWKTPIEDMYPYLPRDEFRANMLIEPLDDWQNP AYPDVVQKKTLDP