Protein Info for AMB_RS03835 in Magnetospirillum magneticum AMB-1

Annotation: YicC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 TIGR00255: TIGR00255 family protein" amino acids 3 to 299 (297 residues), 199.4 bits, see alignment E=5.2e-63 PF03755: YicC-like_N" amino acids 4 to 162 (159 residues), 117.4 bits, see alignment E=8.4e-38 PF08340: YicC-like_C" amino acids 187 to 299 (113 residues), 133.7 bits, see alignment E=3.6e-43

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0747)

Predicted SEED Role

"Protein YicC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W9C4 at UniProt or InterPro

Protein Sequence (299 amino acids)

>AMB_RS03835 YicC family protein (Magnetospirillum magneticum AMB-1)
MTVASMTGYARAEGRDSQGSWVWEGKSVNGRGLELRCKSAPGYDGLEVVAREAAARRLKR
GNVQLSLTVRTETEQSQIRVNEALLSQLVAICDQWQSRAGSVQPARMDGLLAIKGVLEPV
TEAEVGDADSLRAARDEAMKASLEAMLDQLAAMRRVEGARIAAVLAAQLDEIATLSARAG
NCAVLRPEAVRERLRAQVALVLEAAPTLAEDRIAQEVALIAVKADVREELDRLAAHVAAA
RDLLAQGGAVGRKLDFLAQEFNREANTLCSKSSDVELTRVGLDLKAVIDQFKEQVQNIE