Protein Info for AMB_RS03555 in Magnetospirillum magneticum AMB-1

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 457 PF13432: TPR_16" amino acids 67 to 100 (34 residues), 20.5 bits, see alignment 4.6e-07 amino acids 115 to 167 (53 residues), 24.1 bits, see alignment 3.5e-08 amino acids 173 to 236 (64 residues), 29.6 bits, see alignment E=6.5e-10 PF13424: TPR_12" amino acids 68 to 132 (65 residues), 33.9 bits, see alignment E=2.4e-11 amino acids 104 to 165 (62 residues), 32.6 bits, see alignment E=6.2e-11 PF07719: TPR_2" amino acids 68 to 101 (34 residues), 27.6 bits, see alignment 1.7e-09 PF13181: TPR_8" amino acids 68 to 100 (33 residues), 21.5 bits, see alignment (E = 1.5e-07) amino acids 138 to 167 (30 residues), 16.6 bits, see alignment (E = 5.7e-06) amino acids 208 to 236 (29 residues), 14.8 bits, see alignment (E = 2.1e-05) PF13174: TPR_6" amino acids 69 to 100 (32 residues), 23.3 bits, see alignment (E = 5.9e-08) PF14559: TPR_19" amino acids 80 to 136 (57 residues), 26 bits, see alignment 7.4e-09 amino acids 115 to 169 (55 residues), 25.4 bits, see alignment 1.1e-08 amino acids 147 to 208 (62 residues), 27.8 bits, see alignment E=2.1e-09 PF13374: TPR_10" amino acids 136 to 165 (30 residues), 22.8 bits, see alignment (E = 5.9e-08) PF13176: TPR_7" amino acids 138 to 170 (33 residues), 19.6 bits, see alignment (E = 6e-07) PF13489: Methyltransf_23" amino acids 290 to 396 (107 residues), 38.1 bits, see alignment E=1e-12 PF13649: Methyltransf_25" amino acids 302 to 390 (89 residues), 43.8 bits, see alignment E=2.7e-14 PF08241: Methyltransf_11" amino acids 303 to 394 (92 residues), 42.5 bits, see alignment E=7e-14 PF08242: Methyltransf_12" amino acids 303 to 392 (90 residues), 33.5 bits, see alignment E=4.7e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0693)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W9H8 at UniProt or InterPro

Protein Sequence (457 amino acids)

>AMB_RS03555 tetratricopeptide repeat protein (Magnetospirillum magneticum AMB-1)
MAKLDRVEEALTKARTGDLTKARTLSRDLGKVPPGHPSLMELTVAAHQAGDLVLALKFLD
RAAVSGSADALYGRGVILASLGRLDEARTAFAKCLERFPTHEPALTNLGGLEHLAGNLAE
AERCYRAVLDFAPRSALALHNLAGLFLAQGRRDEAEAFARRAVEIEPGPDTALRLADILG
EAGRHAEAAAMLGPVLDAYPADVRLWRAVGHAAKKQGRTLDAVAAYRTALGLDPEDGESS
HMVAALTGTNTERAPADYVRGFFDTYADRFESHLVEEVGYQAPATLRALYERVGGGAMLD
SVLDLGCGTGLTAQAFQGIAGRVFGIDLSPRMLQLAGASGLYAGLREADAATALARSTGL
AAVLATDLFIYVGDLDEIFAGAASALAPGGWFLFSVESGEGEGYTLRPTGRYAQSPAYIR
ALIARHGLEEVACEHGRIRGGSDGDIDGDYWAIRKPV