Protein Info for AMB_RS03355 in Magnetospirillum magneticum AMB-1

Annotation: two-component system response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 387 PF00072: Response_reg" amino acids 27 to 137 (111 residues), 35.8 bits, see alignment E=1.2e-12 PF13487: HD_5" amino acids 214 to 368 (155 residues), 114.3 bits, see alignment E=7.7e-37 TIGR00277: HDIG domain" amino acids 216 to 307 (92 residues), 32.9 bits, see alignment E=2.3e-12 PF01966: HD" amino acids 216 to 337 (122 residues), 56.3 bits, see alignment E=5.7e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0652)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W9L9 at UniProt or InterPro

Protein Sequence (387 amino acids)

>AMB_RS03355 two-component system response regulator (Magnetospirillum magneticum AMB-1)
MTYAFLRRAGMGAIGRDASAAAPRVLVAVIDGMAEHRLQVGQALTSFYRVACFEDLREAV
PHLRREPPLALVVDESAKPFGGRETIRRLRNMPSLKEVRIIATSGKVDSKLFSTAEELGC
DAILSKPFRRSELISTISSLVNHSIEAGWKRLGLYHRHALTSALQTFNGISDLIDRGEAV
EYVAVREACSPLVDAVQRNDFKAILNGVRGHDNYSYVHSMRVATFLSLFGHAMGLKGEDL
LLLSSGGLLHDIGKMSIPHEVLNKPGRLTDDEFAVMRGHVDSSAAYITQCPTMPKGVGLI
AAQHHEKLDGSGYPNGLKGKELNELARMAAIVDVFSALTDRRCYKPPMEPENALKIMHDE
MGSHLDTQMLRLFIDLLLSSAEESAAG