Protein Info for AMB_RS03345 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1357 signal peptide" amino acids 1 to 48 (48 residues), see Phobius details transmembrane" amino acids 798 to 815 (18 residues), see Phobius details PF07494: Reg_prop" amino acids 510 to 532 (23 residues), 20 bits, see alignment (E = 1.7e-07) amino acids 558 to 581 (24 residues), 21.6 bits, see alignment (E = 5e-08) PF07495: Y_Y_Y" amino acids 726 to 791 (66 residues), 50.5 bits, see alignment 4.9e-17 PF00512: HisKA" amino acids 869 to 930 (62 residues), 53.1 bits, see alignment 8.2e-18 PF02518: HATPase_c" amino acids 981 to 1092 (112 residues), 91.5 bits, see alignment E=1.4e-29 PF00072: Response_reg" amino acids 1115 to 1229 (115 residues), 72.6 bits, see alignment E=9.1e-24 PF01627: Hpt" amino acids 1266 to 1336 (71 residues), 25.4 bits, see alignment 4.2e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0650)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W9M1 at UniProt or InterPro

Protein Sequence (1357 amino acids)

>AMB_RS03345 hypothetical protein (Magnetospirillum magneticum AMB-1)
MLGWSLRTEAATFARQAPFLGDRVGRFLLLSLGLFLVVGAFFCPARAEAPRQGEVVVPPV
FSHLTPADGLPYPVALGVAQDRHGFIWAATPGGAARWDGYRMTVFRHDSNDPKSLPENIV
TNALTDEHGQVWLGTASGLIVRYDDNVQGFTTFRDDRGVGLGRPNAMAGDGRGGIWVASR
LALARLDVATKVWRRETGIPAGDVGSVMVDRSGRLWAGTVAGLMRQREDRQSFEPLTMPG
ETTKDMVSAIFEGHDGTIWFGTRRGRVGKVLPNGEVELEAALPPSGHRVTAFAEPRPGIL
WVGQYGGGIYELRAASHMIRSFTHDPAIATGLGDNSVTGLLVDRSGLVWVSTLRGVHRHI
PGNDSILTLVADKHGGLPGPDVRSVAASADGAMWLGLRAEGLALVDRTANVIRTIPSGGQ
PDELPPGANQAIAETADGMVWAGQFSGLFRIDTASGKAGRYEPLDGSNILALRPERDHLW
AGGSMGLARIDPGSTELPKIFHFDGENRASLSDNSAQTLFRDSAGRLWVGTWKGLNLLED
EEIGRFRRFLNDPEDPESLPSDIVNGICEDRRGRIWVATANGIGVFDPQQPGKTRFTRLG
RHHGLPSGTVLSVIAREDGGIVAGTGDGLSLVDQETFTVRTFGPAEGMHVRTFWAGSATR
LADGTLGLGGFGGLAMLRPGPLAGWNFRPPVMVTELRIGGQVVPPTDNIVVRPEEGGFQV
DFSALDFSAPESNRYAYRLVGNDAEWAHVDAHHRTAGYTHLPPGSFRLELRASNSAGVWN
DPPTSLNVRILPEWHQTLWFRVLASAAVLATLFAAERARRAYHWRREQYLNDQIATKTAE
AEAAKMWALAGEEEAHRAKEAAEAAAQLKSRFLAIIGHEIRTPLNGLLGMLQLLDVRGLE
PGQRELLVTAKDAGETLRDLVESVLEYGRDGARRAEITLKDTELRLLANEIMGLVRQQAE
LKSIALTLRIEPEGAIWVRCDPIRLSRILINLLGNAVKFTERGEVALNIAAVPENHRRRL
TIEVKDTGIGIAPDLRDAIFGDFIQADDTITRKYGGAGLGLAISRRMAEHMGGELSVEST
LGMGSKFRLTLLADAGEAPVPGKDTPPQPTDSLHVLVVDDDEINRRVAALLLLNLGHAPV
VVTNGEDAIATLSAGTAIDAILMDIRMPKMDGMETTRRIRRWEKGRDSRIRIIAMTADLT
DEIWQQCEIAGMDCGLSKPTQLDRLRQALGAPMQSDPSVDTRHGPVDLEFVKMQMDTLGP
REMIRLARLFQVTSRGLITDLKAAADLLDRGRIEALAHRLRSATGPLGLVGIADLAGELE
AKAGVETQEQLRAKVALLRQSRRASLKGWAKLARQIT