Protein Info for AMB_RS02865 in Magnetospirillum magneticum AMB-1

Annotation: response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 349 PF00072: Response_reg" amino acids 20 to 127 (108 residues), 69.2 bits, see alignment E=6.9e-23 PF13487: HD_5" amino acids 162 to 325 (164 residues), 144.2 bits, see alignment E=7.3e-46 TIGR00277: HDIG domain" amino acids 172 to 262 (91 residues), 39.2 bits, see alignment E=2.5e-14 PF01966: HD" amino acids 174 to 293 (120 residues), 74.3 bits, see alignment E=2.1e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0553)

Predicted SEED Role

"response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W9W8 at UniProt or InterPro

Protein Sequence (349 amino acids)

>AMB_RS02865 response regulator (Magnetospirillum magneticum AMB-1)
MHLKRDQNMTDMRSRAVDLLVVEDNPADARLIELLLSEVGGIHCRRADCLGQAMGMVAAE
PPDAVLLDLSLPDAHGIETVERFRVAAPTLPIVICTGLDDESMGLLALQHGCQDYLVKGQ
GDGNLIRRTILYAIERKAVEEERRVTAERLKRVLLQTVRSLSLTLEMRDPYTTGHQRRVA
QLSTAIGQRMGLSEAVVEGLRTGGLLHDIGKIHIPAEFLSRPGKLSAEVHKVIRMHPQMG
WEIMKDIEFPWPVADMIRQHHERLDGSGYPLGLKGDEIILESRIIAVADVLEAISSHRPY
RPALGLDVAVAELREHSGSRYDPAVVQACIEVVEERGPGILDEDPSPVL