Protein Info for AMB_RS02760 in Magnetospirillum magneticum AMB-1

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 360 transmembrane" amino acids 28 to 47 (20 residues), see Phobius details amino acids 59 to 80 (22 residues), see Phobius details amino acids 160 to 180 (21 residues), see Phobius details amino acids 201 to 218 (18 residues), see Phobius details amino acids 230 to 252 (23 residues), see Phobius details amino acids 279 to 303 (25 residues), see Phobius details amino acids 325 to 345 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 171 to 347 (177 residues), 76.5 bits, see alignment E=1.1e-25

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 100% identity to mag:amb0536)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W9Y5 at UniProt or InterPro

Protein Sequence (360 amino acids)

>AMB_RS02760 ABC transporter permease (Magnetospirillum magneticum AMB-1)
MNSISQTAGTPPKPARPAFSFSHALNRAAPTLTVAGVGWVVPLAKLLSGSAPRTQLIELW
RQLGVPLLAIGLFLVAWAALAPKVQTSLGAVPGPVQVWEQVGNLVADHQAERAKEAAFYE
RQAKRNAELKAEDAGAETKVRKFTGKPTYLDQIATSLKTVFMGFVLATIVAVPLGVMCGL
SKTINAALNPLIQIFKPVSPLAWLPIVTMVVSASYTSAEPMFEKAFLNSAITVTLCSLWT
TLINTAIGVASIDKDLMNVGRVLNLPMRTTIRKLVMPSSLPFIFTGMRLSLGVGWMVLIA
AEMLAQNPGLGKFVWDEFQNGSSQSLAKIMVAVLTIGLIGFLLDRVMLACQALFSHSATR