Protein Info for AMB_RS02675 in Magnetospirillum magneticum AMB-1
Annotation: YcgN family cysteine cluster protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 63% identical to Y887_THISH: UPF0260 protein Tgr7_0887 (Tgr7_0887) from Thioalkalivibrio sulfidiphilus (strain HL-EbGR7)
KEGG orthology group: K09160, hypothetical protein (inferred from 100% identity to mag:amb0519)Predicted SEED Role
"conserved protein of unknown function; putative YcgN protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q2WA02 at UniProt or InterPro
Protein Sequence (160 amino acids)
>AMB_RS02675 YcgN family cysteine cluster protein (Magnetospirillum magneticum AMB-1) MSASSSANTTKADSEAEGPPFWRTTPLSAMTREQWESLCDGCGRCCLHKLEDADTGEIHY TNVACRLLNLHTCGCKSYAKRWDSVPDCVELSPVVLAGIKWLPSTCAYRVLSEGKVLQWW HPLVSGDPESVHRAGISVRGKVIAESRADLLDYHVVTWPE