Protein Info for AMB_RS02605 in Magnetospirillum magneticum AMB-1

Annotation: flagellar hook-length control protein FliK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 587 PF02120: Flg_hook" amino acids 451 to 535 (85 residues), 59.7 bits, see alignment E=1e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0506)

Predicted SEED Role

"Flagellar hook-length control protein FliK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WA15 at UniProt or InterPro

Protein Sequence (587 amino acids)

>AMB_RS02605 flagellar hook-length control protein FliK (Magnetospirillum magneticum AMB-1)
MTVQSIDKRVVPEANMTPLSLDKQQESVSAEDAFLSVLQQTTQRFAGKNGSLGGLISGDK
VLSEHITRLHMDVKVDAKDARQDAQPDAKDARPLLKADKPRAAGAATARKGDDAQAAPAP
VQKDDDAPATVQAADSDASAQNAPTADDDTVQAPVETKAKDDEQIIVSLDVTITETVQIV
QVADTKADNGPALDLNAMAQTISAQLASADDGKPEADPMAGLSAADRQRITDLENRLVND
VQDGNLDDALDAATELVNQMITKVGQHKAAAEASITDQTDSLADEQARDLAAMLAGSNVH
LDIKVQTTTVDTTPAAQTAATMVDTLSLQDLAAQAVNGQGSGQEQAQGQGFASSQDSGAA
VEQTPATVTLDTNAAATGEAEASPFAAILAAQVEASAADEAAPEQRTVVGLAGVGSAQAA
DKASGGQAAQSAARTPRTLLQAQVMEQVTVQIDKQVKDGADTIKIQLKPYELGKIEIKLE
VSADGHVSATVTADKPETLAMLQKDAKGLEKALEDAGLKPDSAATTFSLKGGEQQQNADR
GNNNTRSRRGRNRAAAGGDEAQLAGAGAAQAARSRTLGGRSGVDISV