Protein Info for AMB_RS02005 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 775 transmembrane" amino acids 94 to 117 (24 residues), see Phobius details amino acids 123 to 143 (21 residues), see Phobius details PF06805: Lambda_tail_I" amino acids 2 to 81 (80 residues), 99.4 bits, see alignment E=2e-32 PF24801: FNIII-A_GpJ" amino acids 285 to 397 (113 residues), 46.8 bits, see alignment E=5e-16 PF13550: Phage-tail_3" amino acids 505 to 648 (144 residues), 37.9 bits, see alignment E=2.8e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0395)

Predicted SEED Role

"Phage-related protein, tail component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WAC6 at UniProt or InterPro

Protein Sequence (775 amino acids)

>AMB_RS02005 hypothetical protein (Magnetospirillum magneticum AMB-1)
MTASIVIVTNPFEPVTSRSVHAVESGITLGGLLQGCSIAEDCWSDGPEILIGGMAVPVGI
YAVRAIADGEVVTVIRWPQGGGGGGGGGKNPMRIVLTIAVMVAAIYLGPMAAVAMGYTAA
GSAAAMATAGIAMVGSVLINTVIPAPKPSMPSLNWGGSGSAPAPSPTYSIQAQGNQGRLG
QPIPVIYGRHLIYPDLASEPYQDYVGGEQYLYQLHVIGQGEYAVEQIRIEDTPISSFEEV
QTETVPPGSRVTLFEPDVVTAAEVAGQELVAPNLAQPGDDGYIGPFTANPVDTTVGALGI
DVVMPRGLYYANDGGSLDSRTVQWQVEARAINAEGGAIGGWAVLAQPSHSAATNSTLRLS
FRYSVSPGRYEVRLKRLDTKDTAERAGHEIRWGALRAYLTGQPDFGAVTLLAVKMRATDN
LSQRSSRMINVIATRKLPVWSAAGGWSAPQPTRSIAWAFADACKADYGAKLADSRIDLKT
LAALDAVWAARGDSFDAVFDTSMTVWEALTRIARCGRAVPIQQGGIVRIIRDAPQTMPVA
MFGPRNIVKGSFKIKYVMPGDDTADAVTVEYFSSRTWKPDETTVKLADSQGDNPAKVNLF
GCTAKDHAQREGLYIAANNRYRRRMVTFRTELEGMIPTYGDLVAITHDMPRWGQGGEVID
WRAESAKPPWTGAVLMLSEPLTWTEGASHYLALRRRDGSLAGPFRVEPMADAPTMVRLAE
PLTVTPYTGGSEERTYFSFGPGQAWAQSARILAIRPRAEQVEITAVAEDARVHVN