Protein Info for AMB_RS01475 in Magnetospirillum magneticum AMB-1

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 46 to 65 (20 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details amino acids 103 to 123 (21 residues), see Phobius details amino acids 135 to 157 (23 residues), see Phobius details amino acids 164 to 184 (21 residues), see Phobius details amino acids 215 to 239 (25 residues), see Phobius details amino acids 251 to 270 (20 residues), see Phobius details amino acids 282 to 304 (23 residues), see Phobius details amino acids 310 to 332 (23 residues), see Phobius details amino acids 347 to 369 (23 residues), see Phobius details amino acids 378 to 397 (20 residues), see Phobius details TIGR00710: drug resistance transporter, Bcr/CflA subfamily" amino acids 9 to 395 (387 residues), 312.4 bits, see alignment E=2.9e-97 PF07690: MFS_1" amino acids 24 to 364 (341 residues), 162 bits, see alignment E=2e-51 PF00083: Sugar_tr" amino acids 41 to 182 (142 residues), 35.9 bits, see alignment E=4.3e-13

Best Hits

KEGG orthology group: K07552, MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein (inferred from 100% identity to mag:amb0291)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WAN0 at UniProt or InterPro

Protein Sequence (404 amino acids)

>AMB_RS01475 MFS transporter (Magnetospirillum magneticum AMB-1)
MLNTVSPSRRMAVLLTLLVAFGPVCTDLYLASLPDMARDLATTTTMVQLTLSAFVGGFAV
MQLVYGPLSDRFGRRPLLLGGVAIYVVASVYCVFAPSIEALIAGRFFQAVGACCGPVLGR
AVVRDLYARDQAAKVMSYMASAMALAPLVAPTVGGWFHTLFGWRSNFLLLALFGVILLVL
VWRMLGETNQHKDPAALDLGRMLENYREILTHRLFLGYVLTMTAAFGGLFSFISASSFVL
IDVMGMEPRHFGLAFAFASAGFLVGGFIGARLTHRFGIERMVFTGTLGCTIAGVTLAALV
WSGLAKPGGIAGIVMIMGPVMAFFASCALVLPNATAGAIAPFPRAAGAASSAMGFIQMSG
GAVAGWLVGTLYDGSARPLAAMVAVMGLLSLLVYLRLVRPAARP