Protein Info for AMB_RS01065 in Magnetospirillum magneticum AMB-1

Annotation: formate hydrogenlyase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 67 to 86 (20 residues), see Phobius details amino acids 92 to 92 (1 residues), see Phobius details amino acids 98 to 117 (20 residues), see Phobius details amino acids 136 to 155 (20 residues), see Phobius details amino acids 161 to 188 (28 residues), see Phobius details amino acids 229 to 249 (21 residues), see Phobius details amino acids 255 to 279 (25 residues), see Phobius details amino acids 291 to 311 (21 residues), see Phobius details PF00146: NADHdh" amino acids 9 to 309 (301 residues), 113.4 bits, see alignment E=6.9e-37

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0210)

Predicted SEED Role

"Formate hydrogenlyase subunit 4" in subsystem Formate hydrogenase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WAW1 at UniProt or InterPro

Protein Sequence (315 amino acids)

>AMB_RS01065 formate hydrogenlyase (Magnetospirillum magneticum AMB-1)
MSAILWQLLQIVLVVAISPLITGWVRLVKSRLNGRIGASPFQPYRDIYRLLQKEAVVAHS
ASWVFRVAPYVTFGAAWLAACIVPAFTTNLFLAQAADLIALVALLGVARFWTALAGMDVG
TSFGGLGASREMMISSLAEPAMLMVTFSLSLISGTTAPAQIIAFVLSGGVGIEVSLGLAL
AALVMVAIAENGRIPIDNPATHLELTMVHEAMVLEYSGRHLALMEGAGMVRLTLFMALIG
GLFAPWGMAQPGGDAVAVLVGLAAFLAKCFVLATALGVFETSIAKMRVFRYADFLGGALL
LGLLATIFLYVSEAV