Protein Info for AMB_RS01010 in Magnetospirillum magneticum AMB-1

Annotation: Rrf2 family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 151 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF02082: Rrf2" amino acids 5 to 131 (127 residues), 100 bits, see alignment E=6.2e-33 TIGR00738: Rrf2 family protein" amino acids 5 to 131 (127 residues), 98.2 bits, see alignment E=1.8e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0200)

Predicted SEED Role

"Predicted transcriptional regulator of cysteine synthase, Rrf2 family" in subsystem Rrf2 family transcriptional regulators

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WAX1 at UniProt or InterPro

Protein Sequence (151 amino acids)

>AMB_RS01010 Rrf2 family transcriptional regulator (Magnetospirillum magneticum AMB-1)
MLRPSKKMLFAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQQLVRAGILVGVR
GPRGGYRLARERRRISVGEVVRVVRALETAEDPYQDMPASQLGAQVIRPMWGDLTEEIMS
RLDAISIDELCMRAYKDGIPSEAHQKLDFII