Protein Info for AMB_RS00910 in Magnetospirillum magneticum AMB-1

Annotation: indolepyruvate ferredoxin subunit alpha

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 699 PF02775: TPP_enzyme_C" amino acids 429 to 571 (143 residues), 54 bits, see alignment E=8.6e-19

Best Hits

KEGG orthology group: K00179, indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC: 1.2.7.8] (inferred from 100% identity to mag:amb0179)

Predicted SEED Role

"Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8)" in subsystem Aromatic amino acid interconversions with aryl acids (EC 1.2.7.8)

Isozymes

Compare fitness of predicted isozymes for: 1.2.7.8

Use Curated BLAST to search for 1.2.7.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WAZ2 at UniProt or InterPro

Protein Sequence (699 amino acids)

>AMB_RS00910 indolepyruvate ferredoxin subunit alpha (Magnetospirillum magneticum AMB-1)
MAERSFQHEIGLLRLGEGETFRGEGILAVTKALLQSGVTYVGGYQGAPVSHLMDVLIEAE
DLLGELGVHVEAATNEAGAAALLAASLAYPVRGAVTWKSVVGTNVASDALSNLASPGVIG
GALIIIGEDYGDGASVIQERSHAFAMKSSLWLLDPRPHLPSIVHMVEKGFELSEASNTPV
MVELRIKACHVTGSFQAKDNKPGAPIQAPAAFDYGRLSHPPSTFAHEAAKVEKRLPAARA
FIREHKLNEVFPGTRDDVGIIVQGGLYNSLMRALAKLGLADALGNSAIPIYCLNVTWPLV
PEEISAFCAGKQSVLMVEEGTPEYLEQTLSLMMRQADIQTKLHGKDCLPQAGEYTADVLA
AGLAKFLGSEPAQAIVNAVDVHRKTAAALLDKELPGRPPGFCTGCPERPVFAALKLAQKD
IGRTHVSADIGCHSFGTLPPFSMGNSILGFGMSLASAAAVGPVTGKRPVAVMGDGGFWHN
GIISGVAGSLFNKGDGVLVILQNGYTSATGQQYMPSTLAEGHRNETPMDIGATLKVMGVK
WLRKVRSYSVSTMRDTFKEAIRGAGQGLRVIIADGECQLARQRRVKAEDAAKLKAGEKVV
RVRYGVDDDICSGDHACIRLSGCPSLTIKPNPDPLRDDPVASVIPSCVGCGLCGEVAHAA
ALCPSFWRAEVIQNPTGLDLWLDGMRRRVIGWMQGRIGA