Protein Info for AMB_RS00765 in Magnetospirillum magneticum AMB-1

Annotation: glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 PF13439: Glyco_transf_4" amino acids 12 to 150 (139 residues), 43.5 bits, see alignment E=1.1e-14 PF13579: Glyco_trans_4_4" amino acids 13 to 151 (139 residues), 37.7 bits, see alignment E=7.8e-13 PF00534: Glycos_transf_1" amino acids 174 to 344 (171 residues), 122.8 bits, see alignment E=3.3e-39 PF13692: Glyco_trans_1_4" amino acids 190 to 331 (142 residues), 105.6 bits, see alignment E=8.3e-34 PF20706: GT4-conflict" amino acids 197 to 346 (150 residues), 33.5 bits, see alignment E=7.3e-12 PF13524: Glyco_trans_1_2" amino acids 283 to 360 (78 residues), 36.1 bits, see alignment E=1.8e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0150)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WB21 at UniProt or InterPro

Protein Sequence (383 amino acids)

>AMB_RS00765 glycosyl transferase (Magnetospirillum magneticum AMB-1)
MRILHTIPGRNWGGMEHRTMEQVRWLKAHGHDVWLASPSDGESYKRAEAAGLPVIDFDFD
RPWKPATVRGFRRLLIEKRVEVVDTHVTRDAKTAAACLDLVAVVRSRHVNQPLKGGMIRR
AQWRLGADWLITVAECTRSQLLEVGLADAKRSVSIGGWADERFFDLPDPVATRARLRAAL
NIPAEAYAWVCVGMIRPDKGQDHLLAALALLKDKGLSPMLAIVGSATAECADYERGLHTQ
LEAAGLSGQVVFTGYRDDVSELMQMGDAVVIPSLTEAQPRVAVQAFAVGKPVVASNVGGV
PEIVFDGRTGLLVPPADPVRLAEAMARVMTDHEATARMAAAARQLAEKDMRFDNRMNQTL
EVYRTAQAHARKRFLPRFKGVGA