Protein Info for ABZR88_RS19880 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: YihY/virulence factor BrkB family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 35 to 58 (24 residues), see Phobius details amino acids 97 to 116 (20 residues), see Phobius details amino acids 144 to 170 (27 residues), see Phobius details amino acids 190 to 218 (29 residues), see Phobius details amino acids 230 to 250 (21 residues), see Phobius details amino acids 259 to 283 (25 residues), see Phobius details TIGR00765: YihY family inner membrane protein" amino acids 20 to 289 (270 residues), 82.8 bits, see alignment E=1.8e-27 PF03631: Virul_fac_BrkB" amino acids 26 to 292 (267 residues), 184.6 bits, see alignment E=1.4e-58

Best Hits

KEGG orthology group: K07058, membrane protein (inferred from 52% identity to cpi:Cpin_6636)

Predicted SEED Role

"Ribonuclease BN (EC 3.1.-.-)" in subsystem LMPTP YfkJ cluster or tRNA processing (EC 3.1.-.-)

Isozymes

Compare fitness of predicted isozymes for: 3.1.-.-

Use Curated BLAST to search for 3.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (332 amino acids)

>ABZR88_RS19880 YihY/virulence factor BrkB family protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKIFNRDFLRHWWKILGATFSGFIADNGLKLSASLAYYTIFSLAPLLILVLSVIGIFLKD
PQTRIDFYHQIQHYMGRQATLQIQSVIKTQDIMGKSGMGLIIGVVTLMLGASSIFIEMQD
SLNIIWRVKAKPRKGWLKLLKNRFLSFSLIVSLGFLLLASLLVNIIISALSDQIDKYLPR
LLGPRLSHLIGETFLMIVNLGITLAVISVLFSIIFKVLPDVKIKWRDVRSGAIFTAVLFV
IGQYLISLYIKYTAQGSAYGTAGSIIVILVWIYYTAAILYIGAEFTQVYAEARGSDIEPA
EYAVHVEQKEVLETVRRLPPQNPELKGELNQD