Protein Info for ABZR88_RS19705 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: gliding motility-associated C-terminal domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 873 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF01436: NHL" amino acids 158 to 184 (27 residues), 25.6 bits, see alignment (E = 3.2e-09) PF05345: He_PIG" amino acids 375 to 425 (51 residues), 41.9 bits, see alignment 4e-14 PF13585: CHU_C" amino acids 789 to 871 (83 residues), 89.1 bits, see alignment E=5.7e-29 TIGR04131: gliding motility-associated C-terminal domain" amino acids 789 to 873 (85 residues), 86.4 bits, see alignment E=5.6e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (873 amino acids)

>ABZR88_RS19705 gliding motility-associated C-terminal domain-containing protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKFRLVAGLSIILLCVFLSSYAQTPQATLMARAETIAQTSRLKTYGNLADANISNVLVAP
PQFSYPTPLVYGINQPIAPLSPLNTGGAVPPGIYGSVNTLSGTFSTVTGVVADKAGNVYV
ADYDANIIYMISPAGAVSVFAGKNTGGFANGYRTSALFSMPDALAIDTDGNIYVADYGNN
QIRKIDVSGNVTTLAGSVTSGNVDGAGTAARFENPRGLTIDKDGNIFVADQTNNLIRKIT
TAGVVSTYAGNGTAGFTNGPRLSASFNTPTSVEVDPAGNLYVSDATNNVIRKIAVDGTVT
TFASGFNFPREARFDAAGNLYVNDQNSSSVKKITPAGVISTLAYGSFIGMATDPDGNLLV
GGGSRVVRITLTGYTIDKPLPAGLVFDPKTGTISGTPTVITPAQNYTITAYNSGGSYSKI
INIAVATNAVPTLIPSVITMPAQSPGGTLGAGNIYDPHATSNNNETPITFTSSDPTVAYI
TPDGQIKVIKPGTITLTANQAASEHYSAATPATQQVIFIAQLRVLLPVINTRTVCAADFN
VGGLVSDNLFPAKYTSSNPAVATVDNNGKIHIVGVGSTDITLSEPGLAPYYLDAVPQSQT
FNVTLPVIPAVTIATTQVNTCPGTPVTFTATSQNAGAAPKYQWQVNGANAGDNSAIFVSS
VLVTGDKVSCSIINTDDACISTYMGNSNTVTVTRDVAINPTIAITSSVSWAFEGTPITLT
ATANNTGPAGELTYQWFVNDLPAGLNSPSFTSSSFVNNDVVTCMVTPLAACSTPATSNPV
KLTIVARVDVPNAFTPNGDGVNDKWVIGGINSFPNCQVNIYDRYGKLVYQSRGYSQPWDG
SFNGQPIPVSTYYYVIDLGFENQKTAGHITIIR