Protein Info for ABZR88_RS19410 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: ABC transporter permease/substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 522 transmembrane" amino acids 27 to 49 (23 residues), see Phobius details amino acids 58 to 82 (25 residues), see Phobius details amino acids 89 to 116 (28 residues), see Phobius details amino acids 137 to 163 (27 residues), see Phobius details amino acids 183 to 203 (21 residues), see Phobius details amino acids 215 to 235 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 41 to 213 (173 residues), 89.8 bits, see alignment E=2e-29 PF04069: OpuAC" amino acids 239 to 371 (133 residues), 92.2 bits, see alignment E=4.2e-30 amino acids 386 to 519 (134 residues), 83.5 bits, see alignment E=1.9e-27

Best Hits

KEGG orthology group: K05845, osmoprotectant transport system substrate-binding protein K05846, osmoprotectant transport system permease protein (inferred from 74% identity to shg:Sph21_2567)

Predicted SEED Role

"L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation" in subsystem Choline and Betaine Uptake and Betaine Biosynthesis (TC 3.A.1.12.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (522 amino acids)

>ABZR88_RS19410 ABC transporter permease/substrate-binding protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MNEQQQTLWGFMSEQSDKLLSQTLEHIGLTFISLLIAVLIGLPLGILIARRQRLSGPVLG
VAGILQTIPSIALLGFMIPVLGIGPKPAIAALFIYALLPIIRNTYTGILGVDAAIAEAAT
AMGMSKRQRLLKVELPLAMPVILAGIRTATVINVGVATLASYIAAGGLGEFIFGGISLNN
TNMILAGAIPAALLAIIFDFLLSRLQKINLKKIKTATATSALLLLFASFYFIPSAYGGKL
TAGFTPEFMGRQDGNLGLHSVYGLKLHTIVISDAVMYKAAYQKALDVISGYSTDGRLKAF
NLIVLKDDKNIFPPYYAAPIVRDDALKHFHQLEKTLNLLSGHINDSVMTELNYRTDYLHQ
TPERVAKDFLAAQGLYKPSRNGHSGTVRIGSKIFGEQYILANMYSMLIKGNTDYDVSVKS
GLGGTLICFNAINNNQIDFYPEYTGTGLLAILQPDAKTVTRLTTNKDSTYNFVKTEFEKR
YHISWLKPIGFNNSYALMMRQKQSDDLRVKTITELKNYLDRK