Protein Info for ABZR88_RS18395 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: peptidylprolyl isomerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 699 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF13624: SurA_N_3" amino acids 1 to 149 (149 residues), 56.6 bits, see alignment E=7.4e-19 PF13623: SurA_N_2" amino acids 1 to 147 (147 residues), 132.3 bits, see alignment E=3.2e-42 PF13145: Rotamase_2" amino acids 224 to 338 (115 residues), 37 bits, see alignment E=1.4e-12 amino acids 457 to 561 (105 residues), 35.4 bits, see alignment E=4.3e-12 PF13616: Rotamase_3" amino acids 331 to 443 (113 residues), 104.1 bits, see alignment E=1.7e-33 PF00639: Rotamase" amino acids 350 to 440 (91 residues), 67.2 bits, see alignment E=5.4e-22

Best Hits

KEGG orthology group: K03770, peptidyl-prolyl cis-trans isomerase D [EC: 5.2.1.8] (inferred from 50% identity to shg:Sph21_1410)

Predicted SEED Role

No annotation

Isozymes

Compare fitness of predicted isozymes for: 5.2.1.8

Use Curated BLAST to search for 5.2.1.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (699 amino acids)

>ABZR88_RS18395 peptidylprolyl isomerase (Mucilaginibacter yixingensis YX-36 DSM 26809)
MSYLRERMGKILAFVIGLALFAFIVGEVVKSGGQFMRGSANTIGEVNGQDISNDDYQKRL
DQNVKNMQQQSGQAASPQLTAYAQEMTWNQLVSQNILQKEIEKLGIVVGVDETKDMVQGK
NLNPQIVQAFGDPKTGEVDRARLNMFLTNLRSAKPGDPMKEQWTAFVEQMIEAKKAEKYT
ALVRNGLYINSLDAKDDYEARNKLVNFKYTVLDYASIPDSKAVPTDADYSAYYDAHKAQF
KNAQETRTFEYVAFNAAASAADSAVIKTQMDKLAGDFKTAKDDSAFVQMNAETKRPLTYT
RKGQLEPKLDTVMFSSAVGTVYGPFVSNGSYEIAKLVDTRVGPDSVKASHILLNPATEGG
VDKAVAKADSLKKLIQGGKSFAELAKTFSTDKGSAEKGGELGTFGRGAMIPAFEDAAFNG
HKGDLVVVTSQFGVHLIQINDQKGSSKVVKVAIVDKPIQASNATQSAAYNKARSFMSNLN
GGNFDEVAKKQGLQIKTANDVTAMATSTMGLDNARKVVKWAFDAEKGDFSDQVFDLENQY
VVARLTQIKPEGTLPLDVVKPQIEAAVRNEVKAKQLIAKLELASNGASSVDQVAQKVGAQ
AVPVQNIVFANPVIPGLAAEYKVIGSVFGSGLHKVSKPVQGEHGVFVFSVDNFVNPAPLT
NAVREKQQIQQMLVQRADNLIFDALKDKANVKDNRAKFL