Protein Info for ABZR88_RS16160 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: LacI family DNA-binding transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 PF00356: LacI" amino acids 8 to 53 (46 residues), 44.4 bits, see alignment 2.3e-15 PF00532: Peripla_BP_1" amino acids 64 to 315 (252 residues), 105.1 bits, see alignment E=9.6e-34 PF13407: Peripla_BP_4" amino acids 67 to 310 (244 residues), 74.6 bits, see alignment E=1.9e-24 PF13377: Peripla_BP_3" amino acids 175 to 343 (169 residues), 94.5 bits, see alignment E=1.6e-30

Best Hits

KEGG orthology group: None (inferred from 65% identity to phe:Phep_1151)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (347 amino acids)

>ABZR88_RS16160 LacI family DNA-binding transcriptional regulator (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKPKKRVTIYDIAKKLNLTASSVSRALNNSSHVNENTKQLILKTAAEMNYKPNSLASNLR
KGKTQTIGVVVPRINQNFFANVISGIEEAIYQKGYNLIICQSNENHEKEVQCVNTLMNQH
VDCIVISVSADGNDYSHLQNALDHNIQLIQFDRVAENLETLKVINDTEQASFEAVSHLIE
QGYKRIALLEGPQVLGIFRQRRDGYLNALKTNNLPVDESLIIPNSWTKEQTTANVRALLS
MPNPPDAIFASRDDFSALGVLEVANDMGVKVPEELGICGYSNEAFTQITSPSITTVDQHA
VYIGQTVSNLYFHEAEAKGKEKESRNSPKTISIKPKLLIRGSTQRNK