Protein Info for ABZR88_RS15120 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1073 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF07660: STN" amino acids 45 to 89 (45 residues), 33.2 bits, see alignment (E = 7.1e-12) TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 106 to 1073 (968 residues), 836.4 bits, see alignment E=4.2e-255 PF13715: CarbopepD_reg_2" amino acids 107 to 187 (81 residues), 57 bits, see alignment 3.3e-19 PF13620: CarboxypepD_reg" amino acids 107 to 164 (58 residues), 36.7 bits, see alignment 8.8e-13 PF07715: Plug" amino acids 196 to 307 (112 residues), 65.8 bits, see alignment E=9.4e-22 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 283 to 313 (31 residues), 65.8 bits, see alignment (E = 2.2e-22)

Best Hits

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1073 amino acids)

>ABZR88_RS15120 TonB-dependent receptor (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKLIIVLTMIALQVSARSLAQKITLNKTNASLELVFDDIRNQSGYDFFYNLRLIKTAKPV
TINVKDAELEDVLTQIFSNQPLTYTIAKDEKAVVVKERKGPTPPHKVTGKVVDEQGITLI
GVVVKCKANNATVITDKDGNFGITVPNDNATLVFSYVGYKTRELLADQANLAITMQPDAS
ALNEVVVVGYGTQKRTDLTGSLSSVSNDKIVATHFNNAVQALAGQLPGVDIVTNSTKPGG
GFDISIRGQNTIKSGTDLSAINPPLYVLDGIYVSSINDISPTDIERIDVLKDASSTAIYG
SRGANGVIIVTTKKGKQGRSSVEYTGSGSISTAMNLPHFTNADEWVQYRIDRSKGQNYTN
PNYQPDLQQLLGTAAYNNYVAGKSISWPDQILKTSYSQSHAVSVNGSAEKLTYSLGAAYN
SENGEIDGDGYNRYNLNASLGKQINNTLKIGATIYTAYEITKQASPETFRTIYRLNPLSD
KFNADGSLKFYPDGITTITNPFLEEKNRHTQANNTHTFGNVYLEAKPLTWLKFTTTFAPD
ISHAEGASYIGSMTKTGAGALANSSAQYQAGRTVKYTWDNLLQADKTFGDHTVNFLLGSS
YYKSAIMNSAEAARAFPTDAYDWYNLGAGTMSSMSTAYTQEQLDSYFGRLNYDYKGRYLL
TATGRTDGSSKLAEGHKWAFFPSAAAAWRISEEDFLKDNTVLSNLKLRFSYGVSGNNGVS
PYSSYPTVANARYLFGTSSVVNTSSITRFANKNLTWERTNEFNLGVDFELFKGRIGGTID
LYNRRTNGIIMNRVMSVLNGFTSLTDNVGSVNNKGIEIALNTVNIKTDNFSWNTSLNFAS
NSNKIVSLSDGSTRDEANGWFVGQPVGVVWTYDQVGYWGENEAAEAKKYGLAPGSIKIRD
IDNSGTINNADKVFKGSLFPKWTGGITNNFTYKNVDLAFTVTTRQGQYSYSQFHGSYSLE
DNENFNVLKLNYWTPQNPGGTWVRPGVPSGPMEVLYYQKTSYVRVGYINAGYNLPKNLIG
RLGLSKLRVFASCQNPFIFTDYVGWDPENAGKDTQTYGYTMTRKFMFGLNLAF