Protein Info for ABZR88_RS13760 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: AAA family ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 PF13476: AAA_23" amino acids 18 to 73 (56 residues), 31.2 bits, see alignment E=5.2e-11 PF13304: AAA_21" amino acids 150 to 194 (45 residues), 29.9 bits, see alignment 9.3e-11

Best Hits

KEGG orthology group: None (inferred from 55% identity to bha:BH0315)

Predicted SEED Role

"ABC transporter, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (242 amino acids)

>ABZR88_RS13760 AAA family ATPase (Mucilaginibacter yixingensis YX-36 DSM 26809)
MPFLSRVSVSPPQDGSYLQHIPSLQNGLRLNLKTNVTFFVGENGSGKSTLLEGIAEQCGF
GLRGGNRNHNFNTGYRFEGYEGALTRNVQLSWTPSRISDGFFMRAESFFNFATYIDELGG
DKSAYGGKSLHEQSHGESFLALFNNKFENGVYILDEPEAALSPARVLAFMAIISQLERNG
RAQFLIATHSPILICYPGATIYQFDDAGVHETKYEDTEHFYLTKSFLNNPSLYLRHLIDA
KD