Protein Info for ABZR88_RS13555 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1087 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF13715: CarbopepD_reg_2" amino acids 28 to 114 (87 residues), 48.2 bits, see alignment E=1.9e-16 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 28 to 1087 (1060 residues), 710.5 bits, see alignment E=4.6e-217 PF13620: CarboxypepD_reg" amino acids 28 to 104 (77 residues), 40.6 bits, see alignment 5.5e-14 PF07715: Plug" amino acids 130 to 254 (125 residues), 67 bits, see alignment E=4e-22 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 230 to 260 (31 residues), 51 bits, see alignment (E = 9.5e-18) PF00593: TonB_dep_Rec" amino acids 526 to 809 (284 residues), 50.3 bits, see alignment E=7.4e-17

Best Hits

KEGG orthology group: None (inferred from 57% identity to psn:Pedsa_3702)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1087 amino acids)

>ABZR88_RS13555 SusC/RagA family TonB-linked outer membrane protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKTPFYTSIFLVLCSFLLLRSAAAQTIVQGRITDKSDKQAVIGATVIEQDKDKRTVTGVS
TDINGNFAIRISNTNNKLVVSSIGYKTFTSGPIGKQTTINVVLEPSASSLGEVNITASKT
VSTGGLNISKRNSTAATATLNAKDVEDLAVSSIDQALQGRLSGVDFGTTSGDPGAGMSIR
IRGTSSITGNANPMIVLDGMPYETEIPADFNFGTADDQGYAQLLNIAPSDIKDITVLKDA
ATTALWGSRAANGVLIINTKRGTIGKPVITYNFKGSVSVQPNPIPLLSGDQYSMLIPEEF
MNATGVPLDFLGNSGQNKAFQYDPSDPFYYYNYSNNTDWAGLVTRNGTIQDHNMSISGGG
EKARYYASVGYYNNLGTTVGTALNRLTSKINLDYIVSEKLRFRTDLTYTHVVNNLNYSSG
IRDIAFRKMPNMSPYLYDEYGTLTSAYFSPESNIQGKYSSTYNPLAMANEGSSKLYGERI
TPKFSVIYDVIPNVLQSTFDVQFDINNTKSKTFLPQIATGRPSTDVNVNRATDNDGDSYN
IASKFNLIYTPRFNSDKHQLSALMSFQTNESRSASYGVTSTNTASSYLQDPSVPSLVNID
GLNLQSTQGLSRDIGLLAQAQYEYLDRYIISLNARMDGNSKFGPDNRYGIFPGISGRWRV
SGEPFMKKTTKFIDELSVRFSYGASGKAPGGSYFNTYKPLDWSYAGRAAIVPTNMELSSL
KWETVVGKNLGFNLVLLKNRITLDAEIYQNTTKDMYYPGLNISTVTGFNKIDMNVGTMDN
DGWELSLYTVPLKTKDWTVNFDFNIARNTNSMRSISDFYPRESSVGVPAQGNYKSYLILG
NPFGSYYGFKFKGVYKDKAATVARDQDGKPIIGPNGQTIYMRYNYPQVDYVFQPGDAMYE
DVNKDGNIDYMDMVYLGNGVPKFVGGFGPTISYKGGIKLSVFFSYRLGYQIVNLARMNTT
RMYNWDNQSAAVLSRWRKPGDITNMPRALYNEGYNWLGSDRYVEDASFYRLSAVNISYSL
KNSVVKRLRLSSLRFNLTGQNLFTWTKYTGQNPDVNTAGSSNPFSYPKDNALTPLSRTFT
LGVTAGF