Protein Info for ABZR88_RS12690 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: MBL fold metallo-hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13483: Lactamase_B_3" amino acids 97 to 308 (212 residues), 57.9 bits, see alignment E=2e-19 PF00753: Lactamase_B" amino acids 99 to 160 (62 residues), 23.3 bits, see alignment E=8.2e-09 PF12706: Lactamase_B_2" amino acids 113 to 309 (197 residues), 143 bits, see alignment E=1.5e-45

Best Hits

KEGG orthology group: None (inferred from 49% identity to zpr:ZPR_1990)

Predicted SEED Role

"Outer membrane protein romA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (361 amino acids)

>ABZR88_RS12690 MBL fold metallo-hydrolase (Mucilaginibacter yixingensis YX-36 DSM 26809)
MTRSCLGIGVAALLLTAITGCGMVRSMGKDPSGAELTKLEALPNFKDGSFENLAERSDST
IRHNLIFHHRPKTIRPSHELPWVKTDLNALPDPAPTIVWFGHSSLLIKTGEGNILIDPIF
SNHAGPVPGLITAFPGTKHYHAADMPPIDVLIISHDHYDHLDYRTLIKLKDRIKMAVVPM
GVGSDLVYWGFDPKKIIELNWSQSTTLPGGLQITATPAQHRSNRSYSKENKTLWASYVIQ
AGKYKLFYSGDSGYGPHFKQIGQQYGPFDLALLECGQYSPNWPWTHLWLGQTAQAAVDLQ
AHLLQPVHWAKFVEADHPWNEPIEKLMPAAAKLNVQVNVPRIGEPYTLGDPPKQKVWWDF
E