Protein Info for ABZR88_RS12210 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: IS21-like element helper ATPase IstB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 253 PF01695: IstB_IS21" amino acids 8 to 240 (233 residues), 241.4 bits, see alignment E=5.1e-76

Best Hits

Swiss-Prot: 45% identical to Y4PL_SINFN: Putative insertion sequence ATP-binding protein y4pL (NGR_a02000) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: None (inferred from 78% identity to shg:Sph21_0857)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (253 amino acids)

>ABZR88_RS12210 IS21-like element helper ATPase IstB (Mucilaginibacter yixingensis YX-36 DSM 26809)
MNTNTLDKLRKLKFYGMYHAFKSCLETGQTAEYTTDELLAHLVEAEWDDRQNRRIERTIM
YAKFRYKASVENIHYHADRSIDRNQVMRLADCHFIDRNENLLITGSTGIGKSYIASAIGH
QACILGYRVFYASTPKLFAKLKMAKADGSYMKDVAKLERQQLLILDDFGIQPFDAQSRAA
LMEIIEDRHGKTSLIITSQLPVSKWYEVIGEKTIADAILDRIVHDAHRMELKGESMRKRR
PAEPEKSYLQNTL