Protein Info for ABZR88_RS10390 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: molybdate ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 223 transmembrane" amino acids 6 to 31 (26 residues), see Phobius details amino acids 41 to 65 (25 residues), see Phobius details amino acids 78 to 102 (25 residues), see Phobius details amino acids 142 to 165 (24 residues), see Phobius details amino acids 194 to 213 (20 residues), see Phobius details TIGR02141: molybdate ABC transporter, permease protein" amino acids 7 to 216 (210 residues), 222.8 bits, see alignment E=1.8e-70 PF00528: BPD_transp_1" amino acids 24 to 213 (190 residues), 72.3 bits, see alignment E=2.2e-24

Best Hits

Swiss-Prot: 46% identical to MODB_RHOCA: Molybdenum transport system permease protein ModB (modB) from Rhodobacter capsulatus

KEGG orthology group: K02018, molybdate transport system permease protein (inferred from 62% identity to dfe:Dfer_3142)

Predicted SEED Role

"Molybdenum transport system permease protein ModB (TC 3.A.1.8.1)" in subsystem Molybdenum cofactor biosynthesis or Transport of Molybdenum (TC 3.A.1.8.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (223 amino acids)

>ABZR88_RS10390 molybdate ABC transporter permease subunit (Mucilaginibacter yixingensis YX-36 DSM 26809)
MDWLPILLSLKLAAVTTALLLVIGLPLAYWLSKGGGIFKVILEALITVPLVLPPSVLGFY
LLLAFSPQHGLGGWLQRVFHLSFVFSFQGLVLASIIYSLPFMIGPIKSALQQLPSSLAQA
SYTLGKTERQTFIHVLLPNIRASVFTAMIMTFAHTLGEFGVVLMIGGNIPGVTKVASIAV
YDSVEGMDYRTANHYSLLLFGITFIMVATMFIINRRNAKSPLE