Protein Info for ABZR88_RS08935 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: O-antigen ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 45 (17 residues), see Phobius details amino acids 52 to 70 (19 residues), see Phobius details amino acids 76 to 95 (20 residues), see Phobius details amino acids 102 to 125 (24 residues), see Phobius details amino acids 154 to 172 (19 residues), see Phobius details amino acids 178 to 195 (18 residues), see Phobius details amino acids 200 to 216 (17 residues), see Phobius details amino acids 221 to 238 (18 residues), see Phobius details amino acids 307 to 331 (25 residues), see Phobius details amino acids 347 to 364 (18 residues), see Phobius details amino acids 370 to 388 (19 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (414 amino acids)

>ABZR88_RS08935 O-antigen ligase (Mucilaginibacter yixingensis YX-36 DSM 26809)
MYKKALLLVLMTAYLYTLAFSIFMPDAFRIPAVITVFPLLLFKHPSAKGFEYSKELILCI
AAVFLYNVVGMNDFPGFFATSMVIGACFLYFNYFIGSSKTRLHATLAIFATLLFASMVVM
VFDHYSPTAADQLRSKLLGEQVKQSPAGIATTQFTFGYQVVSFTTFLFLTVLAYRRHLFV
QIIGFLVCLVCLYLGMNRSAFVCFSAISGIYILAAFRFKGLLLIIATVAFTIAVSNYAAD
NNLGGKDNILSKNRAKEANDFNREDLSAENLKIIGDYPFGLIFYNKKWEDVVYKNPRFPA
GLSSHNAYLMFITYLGPIVGTGMLLMLYLPLASAGVRLIRRPAEHEPLLIATLGAFLALS
LNALSHNGWLLNADGPSVFFFFCLLHLLREHKLVEHKQPQQQTKPTYTLTEFAV