Protein Info for ABZR88_RS08375 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1032 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 40 to 1032 (993 residues), 847 bits, see alignment E=2.6e-258 PF13620: CarboxypepD_reg" amino acids 41 to 107 (67 residues), 42.2 bits, see alignment 1.7e-14 PF13715: CarbopepD_reg_2" amino acids 42 to 123 (82 residues), 64.4 bits, see alignment E=1.6e-21 PF07715: Plug" amino acids 132 to 252 (121 residues), 71 bits, see alignment E=2.3e-23 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 228 to 258 (31 residues), 63.3 bits, see alignment (E = 1.3e-21) PF00593: TonB_dep_Rec" amino acids 463 to 989 (527 residues), 70.4 bits, see alignment E=5.7e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1032 amino acids)

>ABZR88_RS08375 TonB-dependent receptor (Mucilaginibacter yixingensis YX-36 DSM 26809)
MDIFIRSRQLLFYHFLLSALVLVPLFAEAQKEPPPTINSKLEGQVLDASNNQPLPGAVVA
IQGTTHSVSTNIEGRFNFVTGQKYPYTLVITFIGYEKQEKIANGSPVTIYLKPETKQLND
VVVVGYGTQTRKSLISSVSSIKTDEVRDKPQATFAQQLQGKASGLQVSASTGIPGDGMFI
RIRGTTSINASNDPLYVIDGVYVNSTSLQHITTQGQASSPLSDINPDDIESISVLKDADA
TAIYGARAANGVIVITTKRGKKNSSPKVNLSTYFGGAWAPKLWDLVTGPQHAELVNEFYR
NSEADAIAAGNATAAATYKYQPFRALTDNPTATPAPRGLPQDQPTYDRLHEAFRTGFLQN
YNASISGGNGGTTYYIGGGLNKQQADLKTDDYRRASFKVNIDQQIGSFLTVGTSNTLTQT
YRTLARVGDGPQGGILQSALHTPTYLPEYNADGSPAKWAGFDNLQVLLNNTNMHSTSNRI
ISNVYGEAKLGKDFKFRTSWSIDFNNYNEFQYWNSLTNLGAANKNLGTSGVTNNTIWTDE
QTLNYNHVFGKSTVGALVGNSLQGTVNTYTQAQGTSFPNDSFQQIQSAAVTTATGSETRS
NLSSFFGRVNYNYASKYYIEASARYDGSSRFGANHQFGFFPSAGIAWRAKEEDFLKNVEA
INDLKFRASIGVTGNQNGINDFASRGLWGAGANYLSSPGITAQQLANPDLKWESTRQSNI
GIDLSLFNDRLTLSGDVYDKYTSNLLLNLPLSSSSGFTSILANAGEISNRGFEFSISSTN
IKKDHFSWSTDFNFSRNVNKIEKLPTPVVAAYAAERMVQGQSMYTFYAYKQLYVDPQTGN
AVYDDYDHDGKITSNDLEPVGNALPKFTAGLTNSFRYRAFDLSVFFNIVYGNKVYNNNDY
FLEGGGTRDANRAMDTRQLERWQKPGDITDMPRLTALNNNYTLSPTTRNIEDGSFLRLDN
ATLGYTIPKSLTQRIGIASVRVYVTGTNLWLWTKYRGPDPEINVSSSQTVLGYDLGTPPL
PRTIQAGANISF